Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y0M entry

There are 4 chains in PDB entry 8Y0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	TYR 861
B	LEU 23	TYR 861
C	LEU 23	TYR 861
D	LEU 23	TYR 861

There are117 helices in PDB entry 8Y0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	40	Right-handed 310
Helix 2	AA2	A	41	53	Right-handed alpha
Helix 3	AA3	A	56	65	Right-handed alpha
Helix 4	AA4	A	81	85	Right-handed 310
Helix 5	AA5	A	109	117	Right-handed alpha
Helix 6	AA6	A	118	136	Right-handed alpha
Helix 7	AA7	A	157	161	Right-handed 310
Helix 8	AA8	A	165	183	Right-handed alpha
Helix 9	AA9	A	202	209	Right-handed alpha
Helix 10	AB1	A	222	229	Right-handed alpha
Helix 11	AB2	A	231	240	Right-handed alpha
Helix 12	AB3	A	256	259	Right-handed 310
Helix 13	AB4	A	260	265	Right-handed alpha
Helix 14	AB5	A	288	294	Right-handed alpha
Helix 15	AB6	A	313	323	Right-handed alpha
Helix 16	AB7	A	327	345	Right-handed alpha
Helix 17	AB8	A	346	351	Right-handed alpha
Helix 18	AB9	A	387	399	Right-handed alpha
Helix 19	AC1	A	423	426	Right-handed 310
Helix 20	AC2	A	435	439	Right-handed 310
Helix 21	AC3	A	461	472	Right-handed alpha
Helix 22	AC4	A	486	495	Right-handed alpha
Helix 23	AC5	A	527	529	Right-handed 310
Helix 24	AC6	A	530	542	Right-handed alpha
Helix 25	AC7	A	575	577	Right-handed 310
Helix 26	AC8	A	578	588	Right-handed alpha
Helix 27	AC9	A	605	609	Right-handed 310
Helix 28	AD1	A	634	641	Right-handed alpha
Helix 29	AD2	A	757	761	Right-handed 310
Helix 30	AD3	A	822	825	Right-handed 310
Helix 31	AD4	B	38	40	Right-handed 310
Helix 32	AD5	B	41	53	Right-handed alpha
Helix 33	AD6	B	56	64	Right-handed alpha
Helix 34	AD7	B	81	85	Right-handed 310
Helix 35	AD8	B	109	117	Right-handed alpha
Helix 36	AD9	B	118	136	Right-handed alpha
Helix 37	AE1	B	157	161	Right-handed 310
Helix 38	AE2	B	165	183	Right-handed alpha
Helix 39	AE3	B	202	209	Right-handed alpha
Helix 40	AE4	B	222	229	Right-handed alpha
Helix 41	AE5	B	231	240	Right-handed alpha
Helix 42	AE6	B	260	265	Right-handed alpha
Helix 43	AE7	B	288	294	Right-handed alpha
Helix 44	AE8	B	313	323	Right-handed alpha
Helix 45	AE9	B	327	345	Right-handed alpha
Helix 46	AF1	B	346	351	Right-handed alpha
Helix 47	AF2	B	387	399	Right-handed alpha
Helix 48	AF3	B	423	426	Right-handed 310
Helix 49	AF4	B	435	439	Right-handed 310
Helix 50	AF5	B	461	472	Right-handed alpha
Helix 51	AF6	B	486	495	Right-handed alpha
Helix 52	AF7	B	530	540	Right-handed alpha
Helix 53	AF8	B	575	577	Right-handed 310
Helix 54	AF9	B	578	588	Right-handed alpha
Helix 55	AG1	B	605	609	Right-handed 310
Helix 56	AG2	B	634	641	Right-handed alpha
Helix 57	AG3	B	757	761	Right-handed 310
Helix 58	AG4	B	822	825	Right-handed 310
Helix 59	AG5	C	38	40	Right-handed 310
Helix 60	AG6	C	41	53	Right-handed alpha
Helix 61	AG7	C	56	64	Right-handed alpha
Helix 62	AG8	C	81	85	Right-handed 310
Helix 63	AG9	C	109	117	Right-handed alpha
Helix 64	AH1	C	118	136	Right-handed alpha
Helix 65	AH2	C	157	161	Right-handed 310
Helix 66	AH3	C	165	183	Right-handed alpha
Helix 67	AH4	C	202	209	Right-handed alpha
Helix 68	AH5	C	222	229	Right-handed alpha
Helix 69	AH6	C	231	240	Right-handed alpha
Helix 70	AH7	C	256	259	Right-handed 310
Helix 71	AH8	C	260	265	Right-handed alpha
Helix 72	AH9	C	288	294	Right-handed alpha
Helix 73	AI1	C	313	323	Right-handed alpha
Helix 74	AI2	C	327	345	Right-handed alpha
Helix 75	AI3	C	346	351	Right-handed alpha
Helix 76	AI4	C	387	399	Right-handed alpha
Helix 77	AI5	C	423	426	Right-handed 310
Helix 78	AI6	C	435	439	Right-handed 310
Helix 79	AI7	C	461	472	Right-handed alpha
Helix 80	AI8	C	486	495	Right-handed alpha
Helix 81	AI9	C	527	529	Right-handed 310
Helix 82	AJ1	C	530	540	Right-handed alpha
Helix 83	AJ2	C	575	577	Right-handed 310
Helix 84	AJ3	C	578	588	Right-handed alpha
Helix 85	AJ4	C	605	609	Right-handed 310
Helix 86	AJ5	C	634	641	Right-handed alpha
Helix 87	AJ6	C	757	761	Right-handed 310
Helix 88	AJ7	C	822	825	Right-handed 310
Helix 89	AJ8	D	38	40	Right-handed 310
Helix 90	AJ9	D	41	53	Right-handed alpha
Helix 91	AK1	D	56	65	Right-handed alpha
Helix 92	AK2	D	81	85	Right-handed 310
Helix 93	AK3	D	109	117	Right-handed alpha
Helix 94	AK4	D	118	136	Right-handed alpha
Helix 95	AK5	D	157	161	Right-handed 310
Helix 96	AK6	D	165	183	Right-handed alpha
Helix 97	AK7	D	202	209	Right-handed alpha
Helix 98	AK8	D	222	229	Right-handed alpha
Helix 99	AK9	D	231	240	Right-handed alpha
Helix 100	AL1	D	260	265	Right-handed alpha
Helix 101	AL2	D	288	295	Right-handed alpha
Helix 102	AL3	D	313	323	Right-handed alpha
Helix 103	AL4	D	327	345	Right-handed alpha
Helix 104	AL5	D	346	351	Right-handed alpha
Helix 105	AL6	D	387	399	Right-handed alpha
Helix 106	AL7	D	423	426	Right-handed 310
Helix 107	AL8	D	435	439	Right-handed 310
Helix 108	AL9	D	461	472	Right-handed alpha
Helix 109	AM1	D	486	495	Right-handed alpha
Helix 110	AM2	D	527	529	Right-handed 310
Helix 111	AM3	D	530	542	Right-handed alpha
Helix 112	AM4	D	575	577	Right-handed 310
Helix 113	AM5	D	578	588	Right-handed alpha
Helix 114	AM6	D	605	609	Right-handed 310
Helix 115	AM7	D	634	641	Right-handed alpha
Helix 116	AM8	D	757	761	Right-handed 310
Helix 117	AM9	D	822	825	Right-handed 310

There are 36 sheets in PDB entry 8Y0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	90	92	anti-parallel
Strand 3	A	140	141	parallel
Strand 4	A	186	192	parallel
Strand 5	A	244	247	parallel
Strand 6	A	277	280	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	218	220	parallel
Strand 3	A	624	626	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	368	first strand
Strand 2	A	373	377	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	405	first strand
Strand 2	A	566	571	anti-parallel
Strand 3	A	545	551	parallel
Strand 4	A	499	506	parallel
Strand 5	A	417	421	parallel
Strand 6	A	477	481	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	518	519	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	667	first strand
Strand 2	A	763	773	anti-parallel
Strand 3	A	812	820	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	781	first strand
Strand 2	A	805	807	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	802	first strand
Strand 2	A	784	788	anti-parallel
Strand 3	A	841	846	anti-parallel
Strand 4	A	854	858	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	828	first strand
Strand 2	A	833	835	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	90	92	anti-parallel
Strand 3	B	140	141	parallel
Strand 4	B	186	192	parallel
Strand 5	B	244	247	parallel
Strand 6	B	277	280	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	251	252	anti-parallel
Strand 3	B	218	220	parallel
Strand 4	B	624	626	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	368	first strand
Strand 2	B	373	377	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	405	first strand
Strand 2	B	566	571	anti-parallel
Strand 3	B	545	551	parallel
Strand 4	B	499	506	parallel
Strand 5	B	417	421	parallel
Strand 6	B	477	481	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	515	first strand
Strand 2	B	518	519	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	667	first strand
Strand 2	B	763	773	anti-parallel
Strand 3	B	812	820	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	781	first strand
Strand 2	B	805	807	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	802	first strand
Strand 2	B	784	788	anti-parallel
Strand 3	B	841	846	anti-parallel
Strand 4	B	854	858	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	828	first strand
Strand 2	B	833	835	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	90	92	anti-parallel
Strand 3	C	140	141	parallel
Strand 4	C	186	192	parallel
Strand 5	C	244	247	parallel
Strand 6	C	277	280	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	218	220	parallel
Strand 3	C	624	626	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	368	first strand
Strand 2	C	373	377	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	405	first strand
Strand 2	C	566	571	anti-parallel
Strand 3	C	545	551	parallel
Strand 4	C	499	506	parallel
Strand 5	C	417	421	parallel
Strand 6	C	477	481	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	515	first strand
Strand 2	C	518	519	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	667	first strand
Strand 2	C	763	773	anti-parallel
Strand 3	C	812	820	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	781	first strand
Strand 2	C	805	807	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	802	first strand
Strand 2	C	784	788	anti-parallel
Strand 3	C	841	846	anti-parallel
Strand 4	C	854	858	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	826	828	first strand
Strand 2	C	833	835	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	90	92	anti-parallel
Strand 3	D	140	141	parallel
Strand 4	D	186	192	parallel
Strand 5	D	244	247	parallel
Strand 6	D	277	280	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	251	252	anti-parallel
Strand 3	D	218	220	parallel
Strand 4	D	624	626	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	368	first strand
Strand 2	D	373	377	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	405	first strand
Strand 2	D	566	571	anti-parallel
Strand 3	D	545	551	parallel
Strand 4	D	499	506	parallel
Strand 5	D	417	421	parallel
Strand 6	D	477	481	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	515	first strand
Strand 2	D	518	519	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	667	first strand
Strand 2	D	763	773	anti-parallel
Strand 3	D	812	820	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	779	781	first strand
Strand 2	D	805	807	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	798	802	first strand
Strand 2	D	784	788	anti-parallel
Strand 3	D	841	846	anti-parallel
Strand 4	D	854	858	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	826	828	first strand
Strand 2	D	833	835	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0M