Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y0Y entry

There are 3 chains in PDB entry 8Y0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASP 162SER 418
D
 GLN 26LYS 539
A
 THR 333PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8Y0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
240 244Right-handed 310
Helix 2
AA2
E
324 328Right-handed 310
Helix 3
AA3
E
383 387Right-handed 310
Helix 4
AA4
D
53 57Right-handed 310
Helix 5
AA5
D
112 116Right-handed 310
Helix 6
AA6
D
511 515Right-handed 310
Helix 7
AA7
A
338 343Right-handed alpha
Helix 8
AA8
A
364 370Right-handed alpha
Helix 9
AA9
A
416 422Right-handed alpha
Helix 10
AB1
A
438 443Right-handed alpha
Helix 11
AB2
A
502 505Right-handed 310
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There are 13 sheets in PDB entry 8Y0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
167 168first strand
Strand 2
E
180 184anti-parallel
Strand 3
E
231 236anti-parallel
Strand 4
E
223 228anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 174first strand
Strand 2
E
263 267parallel
Strand 3
E
246 250anti-parallel
Strand 4
E
195 199anti-parallel
Strand 5
E
206 210anti-parallel
Strand 6
E
214 215anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
299 303first strand
Strand 2
E
313 321anti-parallel
Strand 3
E
374 380anti-parallel
Strand 4
E
364 369anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
307 308first strand
Strand 2
E
416 417parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 356first strand
Strand 2
E
341 347anti-parallel
Strand 3
E
330 335anti-parallel
Strand 4
E
389 394anti-parallel
Strand 5
E
408 409anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 356first strand
Strand 2
E
341 347anti-parallel
Strand 3
E
330 335anti-parallel
Strand 4
E
389 394anti-parallel
Strand 5
E
413 414anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
D
42 50anti-parallel
Strand 3
D
103 109anti-parallel
Strand 4
D
93 97anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 37first strand
Strand 2
D
141 145parallel
Strand 3
D
117 123anti-parallel
Strand 4
D
59 64anti-parallel
Strand 5
D
70 76anti-parallel
Strand 6
D
83 85anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
438 439first strand
Strand 2
D
451 455anti-parallel
Strand 3
D
502 507anti-parallel
Strand 4
D
495 499anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
442 445first strand
Strand 2
D
534 538parallel
Strand 3
D
517 522anti-parallel
Strand 4
D
465 470anti-parallel
Strand 5
D
477 481anti-parallel
Strand 6
D
485 486anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 377anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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