Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y13 entry

There are 4 chains in PDB entry 8Y13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	ILE 1005
B	LEU 6	ILE 1005
C	GLY 12	ILE 1005
D	LEU 6	ILE 1005

There are216 helices in PDB entry 8Y13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	21	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	47	54	Right-handed alpha
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	115	122	Right-handed alpha
Helix 8	AA8	A	123	125	Right-handed 310
Helix 9	AA9	A	136	146	Right-handed alpha
Helix 10	AB1	A	155	160	Right-handed alpha
Helix 11	AB2	A	192	197	Right-handed alpha
Helix 12	AB3	A	198	211	Right-handed alpha
Helix 13	AB4	A	222	235	Right-handed alpha
Helix 14	AB5	A	254	265	Right-handed alpha
Helix 15	AB6	A	281	298	Right-handed alpha
Helix 16	AB7	A	304	317	Right-handed alpha
Helix 17	AB8	A	318	322	Right-handed 310
Helix 18	AB9	A	326	334	Right-handed alpha
Helix 19	AC1	A	355	366	Right-handed alpha
Helix 20	AC2	A	366	372	Right-handed alpha
Helix 21	AC3	A	374	392	Right-handed alpha
Helix 22	AC4	A	417	426	Right-handed alpha
Helix 23	AC5	A	432	445	Right-handed alpha
Helix 24	AC6	A	447	462	Right-handed alpha
Helix 25	AC7	A	468	493	Right-handed alpha
Helix 26	AC8	A	508	519	Right-handed alpha
Helix 27	AC9	A	523	529	Right-handed alpha
Helix 28	AD1	A	540	546	Right-handed 310
Helix 29	AD2	A	551	562	Right-handed alpha
Helix 30	AD3	A	579	598	Right-handed alpha
Helix 31	AD4	A	600	604	Right-handed 310
Helix 32	AD5	A	605	626	Right-handed alpha
Helix 33	AD6	A	648	659	Right-handed alpha
Helix 34	AD7	A	660	671	Right-handed alpha
Helix 35	AD8	A	672	676	Right-handed 310
Helix 36	AD9	A	680	701	Right-handed alpha
Helix 37	AE1	A	705	723	Right-handed alpha
Helix 38	AE2	A	724	726	Right-handed 310
Helix 39	AE3	A	729	743	Right-handed alpha
Helix 40	AE4	A	750	763	Right-handed alpha
Helix 41	AE5	A	768	786	Right-handed alpha
Helix 42	AE6	A	800	812	Right-handed alpha
Helix 43	AE7	A	817	825	Right-handed alpha
Helix 44	AE8	A	831	840	Right-handed alpha
Helix 45	AE9	A	846	855	Right-handed alpha
Helix 46	AF1	A	863	868	Right-handed alpha
Helix 47	AF2	A	878	898	Right-handed alpha
Helix 48	AF3	A	912	922	Right-handed alpha
Helix 49	AF4	A	929	933	Right-handed 310
Helix 50	AF5	A	937	944	Right-handed alpha
Helix 51	AF6	A	955	961	Right-handed alpha
Helix 52	AF7	A	963	971	Right-handed alpha
Helix 53	AF8	A	974	990	Right-handed alpha
Helix 54	AF9	A	994	1003	Right-handed alpha
Helix 55	AG1	B	7	21	Right-handed alpha
Helix 56	AG2	B	23	39	Right-handed alpha
Helix 57	AG3	B	47	54	Right-handed alpha
Helix 58	AG4	B	58	71	Right-handed alpha
Helix 59	AG5	B	80	95	Right-handed alpha
Helix 60	AG6	B	96	109	Right-handed alpha
Helix 61	AG7	B	115	122	Right-handed alpha
Helix 62	AG8	B	123	125	Right-handed 310
Helix 63	AG9	B	136	146	Right-handed alpha
Helix 64	AH1	B	155	160	Right-handed alpha
Helix 65	AH2	B	192	197	Right-handed alpha
Helix 66	AH3	B	198	211	Right-handed alpha
Helix 67	AH4	B	222	235	Right-handed alpha
Helix 68	AH5	B	254	265	Right-handed alpha
Helix 69	AH6	B	281	298	Right-handed alpha
Helix 70	AH7	B	304	317	Right-handed alpha
Helix 71	AH8	B	318	322	Right-handed 310
Helix 72	AH9	B	326	334	Right-handed alpha
Helix 73	AI1	B	355	366	Right-handed alpha
Helix 74	AI2	B	366	372	Right-handed alpha
Helix 75	AI3	B	374	392	Right-handed alpha
Helix 76	AI4	B	417	426	Right-handed alpha
Helix 77	AI5	B	432	445	Right-handed alpha
Helix 78	AI6	B	447	462	Right-handed alpha
Helix 79	AI7	B	468	493	Right-handed alpha
Helix 80	AI8	B	508	519	Right-handed alpha
Helix 81	AI9	B	523	529	Right-handed alpha
Helix 82	AJ1	B	540	546	Right-handed 310
Helix 83	AJ2	B	551	562	Right-handed alpha
Helix 84	AJ3	B	579	598	Right-handed alpha
Helix 85	AJ4	B	600	604	Right-handed 310
Helix 86	AJ5	B	605	629	Right-handed alpha
Helix 87	AJ6	B	648	659	Right-handed alpha
Helix 88	AJ7	B	660	671	Right-handed alpha
Helix 89	AJ8	B	672	676	Right-handed 310
Helix 90	AJ9	B	680	701	Right-handed alpha
Helix 91	AK1	B	705	723	Right-handed alpha
Helix 92	AK2	B	724	726	Right-handed 310
Helix 93	AK3	B	729	743	Right-handed alpha
Helix 94	AK4	B	750	763	Right-handed alpha
Helix 95	AK5	B	768	786	Right-handed alpha
Helix 96	AK6	B	800	812	Right-handed alpha
Helix 97	AK7	B	817	825	Right-handed alpha
Helix 98	AK8	B	831	840	Right-handed alpha
Helix 99	AK9	B	846	855	Right-handed alpha
Helix 100	AL1	B	863	868	Right-handed alpha
Helix 101	AL2	B	878	898	Right-handed alpha
Helix 102	AL3	B	913	922	Right-handed alpha
Helix 103	AL4	B	929	933	Right-handed 310
Helix 104	AL5	B	937	944	Right-handed alpha
Helix 105	AL6	B	955	961	Right-handed alpha
Helix 106	AL7	B	963	971	Right-handed alpha
Helix 107	AL8	B	974	990	Right-handed alpha
Helix 108	AL9	B	994	1003	Right-handed alpha
Helix 109	AM1	C	13	21	Right-handed alpha
Helix 110	AM2	C	23	39	Right-handed alpha
Helix 111	AM3	C	47	54	Right-handed alpha
Helix 112	AM4	C	58	71	Right-handed alpha
Helix 113	AM5	C	80	95	Right-handed alpha
Helix 114	AM6	C	96	109	Right-handed alpha
Helix 115	AM7	C	115	122	Right-handed alpha
Helix 116	AM8	C	123	125	Right-handed 310
Helix 117	AM9	C	136	146	Right-handed alpha
Helix 118	AN1	C	155	160	Right-handed alpha
Helix 119	AN2	C	192	197	Right-handed alpha
Helix 120	AN3	C	198	211	Right-handed alpha
Helix 121	AN4	C	222	235	Right-handed alpha
Helix 122	AN5	C	254	265	Right-handed alpha
Helix 123	AN6	C	281	298	Right-handed alpha
Helix 124	AN7	C	304	317	Right-handed alpha
Helix 125	AN8	C	318	322	Right-handed 310
Helix 126	AN9	C	326	334	Right-handed alpha
Helix 127	AO1	C	355	366	Right-handed alpha
Helix 128	AO2	C	366	372	Right-handed alpha
Helix 129	AO3	C	374	392	Right-handed alpha
Helix 130	AO4	C	417	426	Right-handed alpha
Helix 131	AO5	C	432	445	Right-handed alpha
Helix 132	AO6	C	447	462	Right-handed alpha
Helix 133	AO7	C	468	493	Right-handed alpha
Helix 134	AO8	C	508	519	Right-handed alpha
Helix 135	AO9	C	523	529	Right-handed alpha
Helix 136	AP1	C	540	546	Right-handed 310
Helix 137	AP2	C	551	562	Right-handed alpha
Helix 138	AP3	C	579	598	Right-handed alpha
Helix 139	AP4	C	600	604	Right-handed 310
Helix 140	AP5	C	605	626	Right-handed alpha
Helix 141	AP6	C	648	659	Right-handed alpha
Helix 142	AP7	C	660	671	Right-handed alpha
Helix 143	AP8	C	672	676	Right-handed 310
Helix 144	AP9	C	680	701	Right-handed alpha
Helix 145	AQ1	C	705	723	Right-handed alpha
Helix 146	AQ2	C	724	726	Right-handed 310
Helix 147	AQ3	C	729	743	Right-handed alpha
Helix 148	AQ4	C	750	763	Right-handed alpha
Helix 149	AQ5	C	768	786	Right-handed alpha
Helix 150	AQ6	C	800	812	Right-handed alpha
Helix 151	AQ7	C	817	825	Right-handed alpha
Helix 152	AQ8	C	831	840	Right-handed alpha
Helix 153	AQ9	C	846	855	Right-handed alpha
Helix 154	AR1	C	863	868	Right-handed alpha
Helix 155	AR2	C	878	898	Right-handed alpha
Helix 156	AR3	C	912	922	Right-handed alpha
Helix 157	AR4	C	929	933	Right-handed 310
Helix 158	AR5	C	937	944	Right-handed alpha
Helix 159	AR6	C	955	961	Right-handed alpha
Helix 160	AR7	C	963	971	Right-handed alpha
Helix 161	AR8	C	974	990	Right-handed alpha
Helix 162	AR9	C	994	1003	Right-handed alpha
Helix 163	AS1	D	7	21	Right-handed alpha
Helix 164	AS2	D	23	39	Right-handed alpha
Helix 165	AS3	D	47	54	Right-handed alpha
Helix 166	AS4	D	58	71	Right-handed alpha
Helix 167	AS5	D	80	95	Right-handed alpha
Helix 168	AS6	D	96	109	Right-handed alpha
Helix 169	AS7	D	115	122	Right-handed alpha
Helix 170	AS8	D	123	125	Right-handed 310
Helix 171	AS9	D	136	146	Right-handed alpha
Helix 172	AT1	D	155	160	Right-handed alpha
Helix 173	AT2	D	192	197	Right-handed alpha
Helix 174	AT3	D	198	211	Right-handed alpha
Helix 175	AT4	D	222	235	Right-handed alpha
Helix 176	AT5	D	254	265	Right-handed alpha
Helix 177	AT6	D	281	298	Right-handed alpha
Helix 178	AT7	D	304	317	Right-handed alpha
Helix 179	AT8	D	318	322	Right-handed 310
Helix 180	AT9	D	326	334	Right-handed alpha
Helix 181	AU1	D	355	366	Right-handed alpha
Helix 182	AU2	D	366	372	Right-handed alpha
Helix 183	AU3	D	374	392	Right-handed alpha
Helix 184	AU4	D	417	426	Right-handed alpha
Helix 185	AU5	D	432	445	Right-handed alpha
Helix 186	AU6	D	447	462	Right-handed alpha
Helix 187	AU7	D	468	493	Right-handed alpha
Helix 188	AU8	D	508	519	Right-handed alpha
Helix 189	AU9	D	523	529	Right-handed alpha
Helix 190	AV1	D	540	546	Right-handed 310
Helix 191	AV2	D	551	562	Right-handed alpha
Helix 192	AV3	D	579	598	Right-handed alpha
Helix 193	AV4	D	600	604	Right-handed 310
Helix 194	AV5	D	605	629	Right-handed alpha
Helix 195	AV6	D	648	659	Right-handed alpha
Helix 196	AV7	D	660	671	Right-handed alpha
Helix 197	AV8	D	672	676	Right-handed 310
Helix 198	AV9	D	680	701	Right-handed alpha
Helix 199	AW1	D	705	723	Right-handed alpha
Helix 200	AW2	D	724	726	Right-handed 310
Helix 201	AW3	D	729	743	Right-handed alpha
Helix 202	AW4	D	750	763	Right-handed alpha
Helix 203	AW5	D	768	786	Right-handed alpha
Helix 204	AW6	D	800	812	Right-handed alpha
Helix 205	AW7	D	817	825	Right-handed alpha
Helix 206	AW8	D	831	840	Right-handed alpha
Helix 207	AW9	D	846	855	Right-handed alpha
Helix 208	AX1	D	863	868	Right-handed alpha
Helix 209	AX2	D	878	898	Right-handed alpha
Helix 210	AX3	D	913	922	Right-handed alpha
Helix 211	AX4	D	929	933	Right-handed 310
Helix 212	AX5	D	937	944	Right-handed alpha
Helix 213	AX6	D	955	961	Right-handed alpha
Helix 214	AX7	D	963	971	Right-handed alpha
Helix 215	AX8	D	974	990	Right-handed alpha
Helix 216	AX9	D	994	1003	Right-handed alpha

There are 12 sheets in PDB entry 8Y13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	42	45	parallel
Strand 3	A	212	215	parallel
Strand 4	A	244	247	parallel
Strand 5	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	168	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	42	45	parallel
Strand 3	B	212	215	parallel
Strand 4	B	244	247	parallel
Strand 5	B	267	270	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	168	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	42	45	parallel
Strand 3	C	212	215	parallel
Strand 4	C	244	247	parallel
Strand 5	C	267	270	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	168	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	395	396	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	42	45	parallel
Strand 3	D	212	215	parallel
Strand 4	D	244	247	parallel
Strand 5	D	267	270	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	168	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	341	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	395	396	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y13

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y13