Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y18


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y18 entry

There are 2 chains in PDB entry 8Y18 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 614
B
 CYS 336ALA 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8Y18. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 79Right-handed alpha
Helix 3
AA3
A
80 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
92 101Right-handed alpha
Helix 6
AA6
A
109 129Right-handed alpha
Helix 7
AA7
A
147 154Right-handed alpha
Helix 8
AA8
A
158 194Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
220 248Right-handed alpha
Helix 12
AB3
A
249 251Right-handed 310
Helix 13
AB4
A
265 267Right-handed 310
Helix 14
AB5
A
275 279Right-handed 310
Helix 15
AB6
A
293 300Right-handed alpha
Helix 16
AB7
A
303 317Right-handed alpha
Helix 17
AB8
A
326 331Right-handed alpha
Helix 18
AB9
A
365 385Right-handed alpha
Helix 19
AC1
A
389 393Right-handed 310
Helix 20
AC2
A
399 413Right-handed alpha
Helix 21
AC3
A
414 421Right-handed alpha
Helix 22
AC4
A
433 447Right-handed alpha
Helix 23
AC5
A
449 466Right-handed alpha
Helix 24
AC6
A
469 471Right-handed 310
Helix 25
AC7
A
472 484Right-handed alpha
Helix 26
AC8
A
499 502Right-handed 310
Helix 27
AC9
A
503 508Right-handed alpha
Helix 28
AD1
A
513 533Right-handed alpha
Helix 29
AD2
A
538 542Right-handed 310
Helix 30
AD3
A
548 559Right-handed alpha
Helix 31
AD4
A
565 572Right-handed alpha
Helix 32
AD5
A
581 587Right-handed alpha
Helix 33
AD6
A
588 599Right-handed alpha
Helix 34
AD7
B
338 343Right-handed alpha
Helix 35
AD8
B
365 372Right-handed alpha
Helix 36
AD9
B
384 390Right-handed 310
Helix 37
AE1
B
406 410Right-handed 310
Helix 38
AE2
B
416 422Right-handed alpha
Helix 39
AE3
B
439 442Right-handed 310
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There are 6 sheets in PDB entry 8Y18. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
395 397anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 379first strand
Strand 2
B
432 437anti-parallel
Strand 3
B
508 513anti-parallel
Strand 4
B
400 402anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 453first strand
Strand 2
B
493 494anti-parallel
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