Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y1C entry

There are 3 chains in PDB entry 8Y1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 14	ASN 1221
C	VAL 14	ASN 1221
A	VAL 14	ASN 1221

There are 78 helices in PDB entry 8Y1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	86	90	Right-handed 310
Helix 2	AA2	B	285	295	Right-handed alpha
Helix 3	AA3	B	329	334	Right-handed alpha
Helix 4	AA4	B	355	363	Right-handed alpha
Helix 5	AA5	B	374	378	Right-handed 310
Helix 6	AA6	B	398	402	Right-handed 310
Helix 7	AA7	B	407	413	Right-handed alpha
Helix 8	AA8	B	442	447	Right-handed alpha
Helix 9	AA9	B	478	483	Right-handed alpha
Helix 10	AB1	B	552	556	Right-handed 310
Helix 11	AB2	B	568	572	Right-handed 310
Helix 12	AB3	B	696	704	Right-handed alpha
Helix 13	AB4	B	813	819	Right-handed alpha
Helix 14	AB5	B	822	830	Right-handed alpha
Helix 15	AB6	B	831	833	Right-handed 310
Helix 16	AB7	B	835	862	Right-handed alpha
Helix 17	AB8	B	901	910	Right-handed alpha
Helix 18	AB9	B	916	923	Right-handed alpha
Helix 19	AC1	B	924	926	Right-handed 310
Helix 20	AC2	B	933	941	Right-handed alpha
Helix 21	AC3	B	951	965	Right-handed alpha
Helix 22	AC4	B	978	989	Right-handed alpha
Helix 23	AC5	B	993	1000	Right-handed alpha
Helix 24	AC6	B	1000	1017	Right-handed alpha
Helix 25	AC7	B	1024	1045	Right-handed alpha
Helix 26	AC8	B	1046	1049	Right-handed 310
Helix 27	AC9	B	1057	1065	Right-handed alpha
Helix 28	AD1	B	1066	1113	Right-handed alpha
Helix 29	AD2	C	86	91	Right-handed 310
Helix 30	AD3	C	286	295	Right-handed alpha
Helix 31	AD4	C	328	334	Right-handed alpha
Helix 32	AD5	C	341	344	Right-handed 310
Helix 33	AD6	C	355	362	Right-handed alpha
Helix 34	AD7	C	374	378	Right-handed 310
Helix 35	AD8	C	397	402	Right-handed 310
Helix 36	AD9	C	408	413	Right-handed alpha
Helix 37	AE1	C	478	482	Right-handed 310
Helix 38	AE2	C	552	556	Right-handed 310
Helix 39	AE3	C	568	572	Right-handed 310
Helix 40	AE4	C	696	704	Right-handed alpha
Helix 41	AE5	C	813	819	Right-handed alpha
Helix 42	AE6	C	822	830	Right-handed alpha
Helix 43	AE7	C	834	863	Right-handed alpha
Helix 44	AE8	C	901	911	Right-handed alpha
Helix 45	AE9	C	914	924	Right-handed alpha
Helix 46	AF1	C	933	940	Right-handed alpha
Helix 47	AF2	C	951	965	Right-handed alpha
Helix 48	AF3	C	971	975	Right-handed 310
Helix 49	AF4	C	978	989	Right-handed alpha
Helix 50	AF5	C	993	1000	Right-handed alpha
Helix 51	AF6	C	1000	1017	Right-handed alpha
Helix 52	AF7	C	1023	1045	Right-handed alpha
Helix 53	AF8	C	1046	1049	Right-handed 310
Helix 54	AF9	C	1069	1113	Right-handed alpha
Helix 55	AG1	A	41	45	Right-handed 310
Helix 56	AG2	A	86	91	Right-handed 310
Helix 57	AG3	A	285	295	Right-handed alpha
Helix 58	AG4	A	328	333	Right-handed alpha
Helix 59	AG5	A	356	363	Right-handed alpha
Helix 60	AG6	A	374	379	Right-handed alpha
Helix 61	AG7	A	397	401	Right-handed 310
Helix 62	AG8	A	442	447	Right-handed alpha
Helix 63	AG9	A	568	570	Right-handed 310
Helix 64	AH1	A	696	704	Right-handed alpha
Helix 65	AH2	A	813	819	Right-handed alpha
Helix 66	AH3	A	822	830	Right-handed alpha
Helix 67	AH4	A	834	863	Right-handed alpha
Helix 68	AH5	A	901	910	Right-handed alpha
Helix 69	AH6	A	914	923	Right-handed alpha
Helix 70	AH7	A	933	941	Right-handed alpha
Helix 71	AH8	A	951	965	Right-handed alpha
Helix 72	AH9	A	978	989	Right-handed alpha
Helix 73	AI1	A	993	1000	Right-handed alpha
Helix 74	AI2	A	1000	1017	Right-handed alpha
Helix 75	AI3	A	1024	1045	Right-handed alpha
Helix 76	AI4	A	1046	1049	Right-handed 310
Helix 77	AI5	A	1057	1062	Right-handed alpha
Helix 78	AI6	A	1069	1113	Right-handed alpha

There are 62 sheets in PDB entry 8Y1C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	A	647	649	parallel
Strand 3	A	655	659	anti-parallel
Strand 4	A	666	670	anti-parallel
Strand 5	A	627	636	anti-parallel
Strand 6	A	619	624	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	68	first strand
Strand 2	B	261	270	anti-parallel
Strand 3	B	276	281	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	240	241	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	227	first strand
Strand 2	B	208	214	anti-parallel
Strand 3	B	197	205	anti-parallel
Strand 4	B	101	107	anti-parallel
Strand 5	B	256	259	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	112	first strand
Strand 2	B	117	120	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	145	151	anti-parallel
Strand 3	B	136	141	anti-parallel
Strand 4	B	124	127	anti-parallel
Strand 5	B	234	236	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	160	first strand
Strand 2	B	173	175	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	306	first strand
Strand 2	B	677	681	anti-parallel
Strand 3	B	689	693	anti-parallel
Strand 4	B	718	721	anti-parallel
Strand 5	B	712	715	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	619	624	parallel
Strand 3	B	627	636	anti-parallel
Strand 4	B	666	670	anti-parallel
Strand 5	B	655	659	anti-parallel
Strand 6	B	647	649	anti-parallel
Strand 7	C	54	55	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	435	437	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	382	392	anti-parallel
Strand 3	B	602	604	anti-parallel
Strand 4	B	353	354	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	382	392	anti-parallel
Strand 3	B	585	597	anti-parallel
Strand 4	B	422	430	anti-parallel
Strand 5	B	364	369	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	463	first strand
Strand 2	B	575	579	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	536	538	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	507	first strand
Strand 2	B	515	518	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	731	first strand
Strand 2	B	762	767	parallel
Strand 3	B	742	746	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	773	775	first strand
Strand 2	C	866	868	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	804	first strand
Strand 2	B	1140	1159	anti-parallel
Strand 3	B	1129	1137	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	804	first strand
Strand 2	B	1140	1159	anti-parallel
Strand 3	B	1175	1180	anti-parallel
Strand 4	B	1183	1188	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	812	first strand
Strand 2	B	943	946	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	866	868	first strand
Strand 2	A	773	775	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	878	879	first strand
Strand 2	B	882	883	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1202	1205	first strand
Strand 2	B	1168	1172	anti-parallel
Strand 3	B	1162	1164	anti-parallel
Strand 4	B	1213	1214	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	67	first strand
Strand 2	C	262	270	anti-parallel
Strand 3	C	276	281	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	256	260	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	197	205	anti-parallel
Strand 5	C	208	214	anti-parallel
Strand 6	C	221	227	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	112	first strand
Strand 2	C	117	120	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	145	151	anti-parallel
Strand 3	C	136	141	anti-parallel
Strand 4	C	124	127	anti-parallel
Strand 5	C	234	236	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	306	first strand
Strand 2	C	677	681	anti-parallel
Strand 3	C	689	693	anti-parallel
Strand 4	C	718	721	anti-parallel
Strand 5	C	712	715	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	319	first strand
Strand 2	C	619	624	parallel
Strand 3	C	627	636	anti-parallel
Strand 4	C	666	670	anti-parallel
Strand 5	C	655	659	anti-parallel
Strand 6	C	647	649	anti-parallel
Strand 7	A	54	55	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	435	437	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	385	392	anti-parallel
Strand 3	C	585	595	anti-parallel
Strand 4	C	422	430	anti-parallel
Strand 5	C	364	371	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	383	first strand
Strand 2	C	602	603	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	462	first strand
Strand 2	C	576	579	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	468	first strand
Strand 2	C	536	538	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	507	first strand
Strand 2	C	515	517	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	731	first strand
Strand 2	C	762	767	parallel
Strand 3	C	742	746	anti-parallel
Strand 4	C	737	739	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	773	775	first strand
Strand 2	A	866	868	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	786	804	first strand
Strand 2	C	1140	1159	anti-parallel
Strand 3	C	1129	1137	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	786	804	first strand
Strand 2	C	1140	1159	anti-parallel
Strand 3	C	1175	1179	anti-parallel
Strand 4	C	1184	1188	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	809	812	first strand
Strand 2	C	943	946	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	878	879	first strand
Strand 2	C	882	883	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1202	1205	first strand
Strand 2	C	1168	1172	anti-parallel
Strand 3	C	1162	1164	anti-parallel
Strand 4	C	1213	1215	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	67	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	240	241	parallel
Strand 3	A	161	162	parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	227	first strand
Strand 2	A	208	214	anti-parallel
Strand 3	A	197	205	anti-parallel
Strand 4	A	101	107	anti-parallel
Strand 5	A	256	260	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	112	first strand
Strand 2	A	117	120	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	190	first strand
Strand 2	A	145	151	anti-parallel
Strand 3	A	136	141	anti-parallel
Strand 4	A	124	127	anti-parallel
Strand 5	A	234	237	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	306	first strand
Strand 2	A	677	681	anti-parallel
Strand 3	A	689	693	anti-parallel
Strand 4	A	718	721	anti-parallel
Strand 5	A	712	715	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	435	436	parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	385	392	anti-parallel
Strand 3	A	585	595	anti-parallel
Strand 4	A	422	430	anti-parallel
Strand 5	A	364	371	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	602	603	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	463	first strand
Strand 2	A	575	579	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	536	537	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	477	first strand
Strand 2	A	500	502	parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	515	517	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	572	573	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	731	first strand
Strand 2	A	762	767	parallel
Strand 3	A	742	746	anti-parallel
Strand 4	A	736	739	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	804	first strand
Strand 2	A	1140	1158	anti-parallel
Strand 3	A	1129	1137	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	812	first strand
Strand 2	A	943	946	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	879	first strand
Strand 2	A	882	883	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1205	first strand
Strand 2	A	1168	1172	anti-parallel
Strand 3	A	1162	1164	anti-parallel
Strand 4	A	1213	1214	parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1180	first strand
Strand 2	A	1183	1188	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1C