Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y1K entry

There are 10 chains in PDB entry 8Y1K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLU 3	SER 586
A	GLU 3	SER 586
B	GLU 3	SER 586
E	GLU 3	SER 586
D	GLU 3	SER 586
C	GLU 3	SER 586
H	LEU 11	ASP 372
G	LEU 11	ASP 372
I	G 1	A 12
J	T 8	C 19

There are190 helices in PDB entry 8Y1K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	26	33	Right-handed alpha
Helix 2	AA2	F	67	79	Right-handed alpha
Helix 3	AA3	F	86	91	Right-handed alpha
Helix 4	AA4	F	131	141	Right-handed alpha
Helix 5	AA5	F	180	185	Right-handed alpha
Helix 6	AA6	F	198	214	Right-handed alpha
Helix 7	AA7	F	239	248	Right-handed alpha
Helix 8	AA8	F	259	272	Right-handed alpha
Helix 9	AA9	F	274	277	Right-handed 310
Helix 10	AB1	F	291	306	Right-handed alpha
Helix 11	AB2	F	311	325	Right-handed alpha
Helix 12	AB3	F	327	342	Right-handed alpha
Helix 13	AB4	F	362	373	Right-handed alpha
Helix 14	AB5	F	385	392	Right-handed alpha
Helix 15	AB6	F	393	402	Right-handed 310
Helix 16	AB7	F	410	421	Right-handed alpha
Helix 17	AB8	F	434	439	Right-handed alpha
Helix 18	AB9	F	441	460	Right-handed alpha
Helix 19	AC1	F	475	478	Right-handed 310
Helix 20	AC2	F	484	497	Right-handed alpha
Helix 21	AC3	F	506	510	Right-handed 310
Helix 22	AC4	F	511	518	Right-handed alpha
Helix 23	AC5	F	528	539	Right-handed alpha
Helix 24	AC6	F	540	544	Right-handed 310
Helix 25	AC7	F	545	552	Right-handed alpha
Helix 26	AC8	F	576	585	Right-handed alpha
Helix 27	AC9	A	26	33	Right-handed alpha
Helix 28	AD1	A	67	78	Right-handed alpha
Helix 29	AD2	A	81	86	Right-handed alpha
Helix 30	AD3	A	121	123	Right-handed 310
Helix 31	AD4	A	131	141	Right-handed alpha
Helix 32	AD5	A	180	185	Right-handed alpha
Helix 33	AD6	A	198	214	Right-handed alpha
Helix 34	AD7	A	239	248	Right-handed alpha
Helix 35	AD8	A	259	272	Right-handed alpha
Helix 36	AD9	A	274	277	Right-handed 310
Helix 37	AE1	A	291	306	Right-handed alpha
Helix 38	AE2	A	311	325	Right-handed alpha
Helix 39	AE3	A	327	342	Right-handed alpha
Helix 40	AE4	A	362	373	Right-handed alpha
Helix 41	AE5	A	385	392	Right-handed alpha
Helix 42	AE6	A	393	402	Right-handed 310
Helix 43	AE7	A	410	421	Right-handed alpha
Helix 44	AE8	A	436	440	Right-handed 310
Helix 45	AE9	A	441	460	Right-handed alpha
Helix 46	AF1	A	474	479	Right-handed alpha
Helix 47	AF2	A	484	493	Right-handed alpha
Helix 48	AF3	A	506	510	Right-handed 310
Helix 49	AF4	A	511	516	Right-handed alpha
Helix 50	AF5	A	528	539	Right-handed alpha
Helix 51	AF6	A	540	544	Right-handed 310
Helix 52	AF7	A	545	552	Right-handed alpha
Helix 53	AF8	A	576	586	Right-handed alpha
Helix 54	AF9	B	26	33	Right-handed alpha
Helix 55	AG1	B	67	78	Right-handed alpha
Helix 56	AG2	B	86	94	Right-handed alpha
Helix 57	AG3	B	121	125	Right-handed 310
Helix 58	AG4	B	131	140	Right-handed alpha
Helix 59	AG5	B	180	185	Right-handed 310
Helix 60	AG6	B	198	214	Right-handed alpha
Helix 61	AG7	B	239	248	Right-handed alpha
Helix 62	AG8	B	259	272	Right-handed alpha
Helix 63	AG9	B	274	278	Right-handed 310
Helix 64	AH1	B	287	290	Right-handed 310
Helix 65	AH2	B	291	306	Right-handed alpha
Helix 66	AH3	B	311	325	Right-handed alpha
Helix 67	AH4	B	327	342	Right-handed alpha
Helix 68	AH5	B	362	373	Right-handed alpha
Helix 69	AH6	B	385	392	Right-handed alpha
Helix 70	AH7	B	393	401	Right-handed 310
Helix 71	AH8	B	410	421	Right-handed alpha
Helix 72	AH9	B	436	440	Right-handed 310
Helix 73	AI1	B	441	461	Right-handed alpha
Helix 74	AI2	B	474	479	Right-handed alpha
Helix 75	AI3	B	484	493	Right-handed alpha
Helix 76	AI4	B	506	510	Right-handed 310
Helix 77	AI5	B	511	516	Right-handed alpha
Helix 78	AI6	B	528	539	Right-handed alpha
Helix 79	AI7	B	540	544	Right-handed 310
Helix 80	AI8	B	545	552	Right-handed alpha
Helix 81	AI9	B	576	586	Right-handed alpha
Helix 82	AJ1	E	26	31	Right-handed alpha
Helix 83	AJ2	E	67	78	Right-handed alpha
Helix 84	AJ3	E	86	94	Right-handed alpha
Helix 85	AJ4	E	131	140	Right-handed alpha
Helix 86	AJ5	E	180	185	Right-handed 310
Helix 87	AJ6	E	198	214	Right-handed alpha
Helix 88	AJ7	E	239	248	Right-handed alpha
Helix 89	AJ8	E	259	272	Right-handed alpha
Helix 90	AJ9	E	274	277	Right-handed 310
Helix 91	AK1	E	291	306	Right-handed alpha
Helix 92	AK2	E	311	325	Right-handed alpha
Helix 93	AK3	E	327	342	Right-handed alpha
Helix 94	AK4	E	362	375	Right-handed alpha
Helix 95	AK5	E	385	392	Right-handed alpha
Helix 96	AK6	E	393	402	Right-handed 310
Helix 97	AK7	E	410	421	Right-handed alpha
Helix 98	AK8	E	436	440	Right-handed 310
Helix 99	AK9	E	441	460	Right-handed alpha
Helix 100	AL1	E	474	479	Right-handed alpha
Helix 101	AL2	E	484	493	Right-handed alpha
Helix 102	AL3	E	494	497	Right-handed 310
Helix 103	AL4	E	506	510	Right-handed 310
Helix 104	AL5	E	511	518	Right-handed alpha
Helix 105	AL6	E	528	539	Right-handed alpha
Helix 106	AL7	E	540	544	Right-handed 310
Helix 107	AL8	E	545	551	Right-handed alpha
Helix 108	AL9	E	576	586	Right-handed alpha
Helix 109	AM1	D	26	33	Right-handed alpha
Helix 110	AM2	D	67	78	Right-handed alpha
Helix 111	AM3	D	86	91	Right-handed alpha
Helix 112	AM4	D	131	139	Right-handed alpha
Helix 113	AM5	D	180	184	Right-handed 310
Helix 114	AM6	D	198	214	Right-handed alpha
Helix 115	AM7	D	239	248	Right-handed alpha
Helix 116	AM8	D	259	272	Right-handed alpha
Helix 117	AM9	D	274	277	Right-handed 310
Helix 118	AN1	D	291	301	Right-handed alpha
Helix 119	AN2	D	311	325	Right-handed alpha
Helix 120	AN3	D	327	342	Right-handed alpha
Helix 121	AN4	D	362	373	Right-handed alpha
Helix 122	AN5	D	386	392	Right-handed alpha
Helix 123	AN6	D	393	402	Right-handed 310
Helix 124	AN7	D	410	421	Right-handed alpha
Helix 125	AN8	D	435	440	Right-handed 310
Helix 126	AN9	D	441	461	Right-handed alpha
Helix 127	AO1	D	484	493	Right-handed alpha
Helix 128	AO2	D	494	497	Right-handed 310
Helix 129	AO3	D	511	516	Right-handed alpha
Helix 130	AO4	D	528	539	Right-handed alpha
Helix 131	AO5	D	540	544	Right-handed 310
Helix 132	AO6	D	545	552	Right-handed alpha
Helix 133	AO7	D	576	585	Right-handed alpha
Helix 134	AO8	C	26	33	Right-handed alpha
Helix 135	AO9	C	67	78	Right-handed alpha
Helix 136	AP1	C	86	94	Right-handed alpha
Helix 137	AP2	C	131	140	Right-handed alpha
Helix 138	AP3	C	198	214	Right-handed alpha
Helix 139	AP4	C	239	248	Right-handed alpha
Helix 140	AP5	C	259	272	Right-handed alpha
Helix 141	AP6	C	273	277	Right-handed 310
Helix 142	AP7	C	291	303	Right-handed alpha
Helix 143	AP8	C	311	325	Right-handed alpha
Helix 144	AP9	C	327	342	Right-handed alpha
Helix 145	AQ1	C	362	373	Right-handed alpha
Helix 146	AQ2	C	385	392	Right-handed alpha
Helix 147	AQ3	C	397	402	Right-handed 310
Helix 148	AQ4	C	410	421	Right-handed alpha
Helix 149	AQ5	C	436	440	Right-handed 310
Helix 150	AQ6	C	441	461	Right-handed alpha
Helix 151	AQ7	C	474	479	Right-handed alpha
Helix 152	AQ8	C	484	493	Right-handed alpha
Helix 153	AQ9	C	506	510	Right-handed 310
Helix 154	AR1	C	511	518	Right-handed alpha
Helix 155	AR2	C	528	539	Right-handed alpha
Helix 156	AR3	C	540	544	Right-handed 310
Helix 157	AR4	C	545	550	Right-handed alpha
Helix 158	AR5	C	576	586	Right-handed alpha
Helix 159	AR6	H	24	41	Right-handed alpha
Helix 160	AR7	H	110	117	Right-handed alpha
Helix 161	AR8	H	122	136	Right-handed alpha
Helix 162	AR9	H	144	148	Right-handed 310
Helix 163	AS1	H	149	173	Right-handed alpha
Helix 164	AS2	H	176	181	Right-handed 310
Helix 165	AS3	H	195	210	Right-handed alpha
Helix 166	AS4	H	227	234	Right-handed 310
Helix 167	AS5	H	248	263	Right-handed alpha
Helix 168	AS6	H	301	315	Right-handed alpha
Helix 169	AS7	H	325	334	Right-handed alpha
Helix 170	AS8	H	338	356	Right-handed alpha
Helix 171	AS9	H	358	371	Right-handed alpha
Helix 172	AT1	G	12	17	Right-handed 310
Helix 173	AT2	G	23	41	Right-handed alpha
Helix 174	AT3	G	72	75	Right-handed 310
Helix 175	AT4	G	88	90	Right-handed 310
Helix 176	AT5	G	101	107	Right-handed alpha
Helix 177	AT6	G	111	119	Right-handed alpha
Helix 178	AT7	G	122	136	Right-handed alpha
Helix 179	AT8	G	138	143	Right-handed 310
Helix 180	AT9	G	144	149	Right-handed alpha
Helix 181	AU1	G	149	173	Right-handed alpha
Helix 182	AU2	G	177	181	Right-handed 310
Helix 183	AU3	G	195	209	Right-handed alpha
Helix 184	AU4	G	226	239	Right-handed alpha
Helix 185	AU5	G	248	263	Right-handed alpha
Helix 186	AU6	G	264	267	Right-handed 310
Helix 187	AU7	G	301	315	Right-handed alpha
Helix 188	AU8	G	325	335	Right-handed alpha
Helix 189	AU9	G	339	357	Right-handed alpha
Helix 190	AV1	G	358	371	Right-handed alpha

There are 30 sheets in PDB entry 8Y1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	15	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	96	107	anti-parallel
Strand 4	F	111	114	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	15	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	96	107	anti-parallel
Strand 4	F	49	59	anti-parallel
Strand 5	F	41	46	anti-parallel
Strand 6	F	125	129	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	163	first strand
Strand 2	F	171	178	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	191	first strand
Strand 2	F	500	503	parallel
Strand 3	F	468	473	parallel
Strand 4	F	218	221	parallel
Strand 5	F	430	433	parallel
Strand 6	F	253	257	parallel
Strand 7	F	279	283	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	351	353	first strand
Strand 2	F	356	358	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	521	523	first strand
Strand 2	F	557	562	anti-parallel
Strand 3	F	566	573	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	113	114	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	51	59	anti-parallel
Strand 5	A	41	46	anti-parallel
Strand 6	A	125	129	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	178	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	566	574	anti-parallel
Strand 4	A	557	562	anti-parallel
Strand 5	A	521	523	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	498	503	parallel
Strand 3	A	468	473	parallel
Strand 4	A	218	223	parallel
Strand 5	A	430	434	parallel
Strand 6	A	253	257	parallel
Strand 7	A	279	283	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	111	114	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	49	59	anti-parallel
Strand 5	B	41	46	anti-parallel
Strand 6	B	126	128	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	178	first strand
Strand 2	B	158	163	anti-parallel
Strand 3	B	566	574	anti-parallel
Strand 4	B	557	562	anti-parallel
Strand 5	B	521	523	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	498	504	parallel
Strand 3	B	468	473	parallel
Strand 4	B	218	223	parallel
Strand 5	B	430	434	parallel
Strand 6	B	253	255	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	358	359	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	13	15	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	96	102	anti-parallel
Strand 4	E	49	59	anti-parallel
Strand 5	E	41	46	anti-parallel
Strand 6	E	125	128	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	107	first strand
Strand 2	E	111	114	anti-parallel

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There are 12 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	179	first strand
Strand 2	E	157	163	anti-parallel
Strand 3	E	570	574	anti-parallel
Strand 4	E	557	562	anti-parallel
Strand 5	E	520	523	anti-parallel
Strand 6	E	188	191	parallel
Strand 7	E	500	503	parallel
Strand 8	E	468	473	parallel
Strand 9	E	218	223	parallel
Strand 10	E	430	434	parallel
Strand 11	E	253	257	parallel
Strand 12	E	279	283	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	353	first strand
Strand 2	E	356	358	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	96	107	anti-parallel
Strand 4	D	111	114	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	96	107	anti-parallel
Strand 4	D	49	59	anti-parallel
Strand 5	D	41	46	anti-parallel
Strand 6	D	126	129	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	179	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	570	574	anti-parallel
Strand 4	D	557	562	anti-parallel
Strand 5	D	520	523	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	500	503	parallel
Strand 3	D	468	473	parallel
Strand 4	D	218	221	parallel
Strand 5	D	430	433	parallel
Strand 6	D	253	257	parallel
Strand 7	D	279	283	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	352	first strand
Strand 2	D	357	358	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	96	107	anti-parallel
Strand 4	C	111	114	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	96	107	anti-parallel
Strand 4	C	50	59	anti-parallel
Strand 5	C	41	45	anti-parallel
Strand 6	C	126	129	anti-parallel

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There are 12 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	179	first strand
Strand 2	C	157	163	anti-parallel
Strand 3	C	570	574	anti-parallel
Strand 4	C	557	562	anti-parallel
Strand 5	C	520	523	anti-parallel
Strand 6	C	189	191	parallel
Strand 7	C	498	503	parallel
Strand 8	C	468	473	parallel
Strand 9	C	218	223	parallel
Strand 10	C	430	434	parallel
Strand 11	C	253	256	parallel
Strand 12	C	279	282	parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	243	246	anti-parallel
Strand 3	H	275	279	anti-parallel
Strand 4	H	291	295	anti-parallel
Strand 5	H	213	217	anti-parallel
Strand 6	H	182	186	parallel
Strand 7	H	56	62	parallel
Strand 8	H	77	86	anti-parallel
Strand 9	H	92	100	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	243	246	anti-parallel
Strand 3	G	274	279	anti-parallel
Strand 4	G	291	296	anti-parallel
Strand 5	G	213	216	anti-parallel
Strand 6	G	182	186	parallel
Strand 7	G	56	62	parallel
Strand 8	G	77	86	anti-parallel
Strand 9	G	95	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y1K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1K