Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y1M entry

There are 2 chains in PDB entry 8Y1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2HIS 359
B
 ASP 2HIS 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8Y1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
27 31Right-handed 310
Helix 4
AA4
A
32 43Right-handed alpha
Helix 5
AA5
A
53 58Right-handed alpha
Helix 6
AA6
A
66 79Right-handed alpha
Helix 7
AA7
A
95 100Right-handed 310
Helix 8
AA8
A
106 110Right-handed 310
Helix 9
AA9
A
112 139Right-handed alpha
Helix 10
AB1
A
161 168Right-handed alpha
Helix 11
AB2
A
169 184Right-handed alpha
Helix 12
AB3
A
198 215Right-handed alpha
Helix 13
AB4
A
234 247Right-handed alpha
Helix 14
AB5
A
272 276Right-handed 310
Helix 15
AB6
A
277 298Right-handed alpha
Helix 16
AB7
A
315 325Right-handed alpha
Helix 17
AB8
A
343 351Right-handed alpha
Helix 18
AB9
B
5 9Right-handed 310
Helix 19
AC1
B
11 16Right-handed alpha
Helix 20
AC2
B
27 31Right-handed 310
Helix 21
AC3
B
32 43Right-handed alpha
Helix 22
AC4
B
53 58Right-handed alpha
Helix 23
AC5
B
66 79Right-handed alpha
Helix 24
AC6
B
95 100Right-handed 310
Helix 25
AC7
B
106 110Right-handed 310
Helix 26
AC8
B
112 139Right-handed alpha
Helix 27
AC9
B
161 168Right-handed alpha
Helix 28
AD1
B
169 184Right-handed alpha
Helix 29
AD2
B
198 215Right-handed alpha
Helix 30
AD3
B
234 247Right-handed alpha
Helix 31
AD4
B
272 276Right-handed 310
Helix 32
AD5
B
277 298Right-handed alpha
Helix 33
AD6
B
315 324Right-handed alpha
Helix 34
AD7
B
343 351Right-handed alpha
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There are 2 sheets in PDB entry 8Y1M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
251 260parallel
Strand 3
A
302 307parallel
Strand 4
A
21 26parallel
Strand 5
A
45 48parallel
Strand 6
A
82 89parallel
Strand 7
A
144 149parallel
Strand 8
A
188 193parallel
Strand 9
A
221 224parallel
Strand 10
A
251 260parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
251 260parallel
Strand 3
B
302 307parallel
Strand 4
B
21 26parallel
Strand 5
B
45 48parallel
Strand 6
B
82 89parallel
Strand 7
B
144 149parallel
Strand 8
B
188 193parallel
Strand 9
B
221 224parallel
Strand 10
B
251 260parallel
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