Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y1O entry

There is 1 chain in PDB entry 8Y1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3ASP 2103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 8Y1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 21Right-handed alpha
Helix 2
AA2
A
21 46Right-handed alpha
Helix 3
AA3
A
62 65Right-handed 310
Helix 4
AA4
A
66 76Right-handed alpha
Helix 5
AA5
A
86 90Right-handed 310
Helix 6
AA6
A
100 113Right-handed alpha
Helix 7
AA7
A
117 135Right-handed alpha
Helix 8
AA8
A
178 196Right-handed alpha
Helix 9
AA9
A
197 208Right-handed alpha
Helix 10
AB1
A
215 225Right-handed alpha
Helix 11
AB2
A
265 277Right-handed alpha
Helix 12
AB3
A
277 286Right-handed alpha
Helix 13
AB4
A
287 292Right-handed alpha
Helix 14
AB5
A
301 312Right-handed alpha
Helix 15
AB6
A
313 315Right-handed 310
Helix 16
AB7
A
319 338Right-handed alpha
Helix 17
AB8
A
343 352Right-handed alpha
Helix 18
AB9
A
372 377Right-handed alpha
Helix 19
AC1
A
386 404Right-handed alpha
Helix 20
AC2
A
417 431Right-handed alpha
Helix 21
AC3
A
503 520Right-handed alpha
Helix 22
AC4
A
541 546Right-handed alpha
Helix 23
AC5
A
549 558Right-handed alpha
Helix 24
AC6
A
564 575Right-handed alpha
Helix 25
AC7
A
576 585Right-handed alpha
Helix 26
AC8
A
587 617Right-handed alpha
Helix 27
AC9
A
624 648Right-handed alpha
Helix 28
AD1
A
652 666Right-handed alpha
Helix 29
AD2
A
668 677Right-handed alpha
Helix 30
AD3
A
682 689Right-handed alpha
Helix 31
AD4
A
692 710Right-handed alpha
Helix 32
AD5
A
729 735Right-handed alpha
Helix 33
AD6
A
735 752Right-handed alpha
Helix 34
AD7
A
753 755Right-handed 310
Helix 35
AD8
A
848 854Right-handed alpha
Helix 36
AD9
A
879 881Right-handed 310
Helix 37
AE1
A
898 910Right-handed alpha
Helix 38
AE2
A
916 927Right-handed alpha
Helix 39
AE3
A
944 952Right-handed alpha
Helix 40
AE4
A
953 955Right-handed 310
Helix 41
AE5
A
971 985Right-handed alpha
Helix 42
AE6
A
1074 1086Right-handed alpha
Helix 43
AE7
A
1109 1125Right-handed alpha
Helix 44
AE8
A
1138 1148Right-handed alpha
Helix 45
AE9
A
1215 1235Right-handed alpha
Helix 46
AF1
A
1235 1257Right-handed alpha
Helix 47
AF2
A
1272 1277Right-handed 310
Helix 48
AF3
A
1290 1304Right-handed alpha
Helix 49
AF4
A
1310 1315Right-handed alpha
Helix 50
AF5
A
1324 1334Right-handed alpha
Helix 51
AF6
A
1390 1400Right-handed alpha
Helix 52
AF7
A
1428 1443Right-handed alpha
Helix 53
AF8
A
1449 1464Right-handed alpha
Helix 54
AF9
A
1465 1467Right-handed 310
Helix 55
AG1
A
1481 1498Right-handed alpha
Helix 56
AG2
A
1503 1508Right-handed alpha
Helix 57
AG3
A
1520 1529Right-handed alpha
Helix 58
AG4
A
1533 1547Right-handed alpha
Helix 59
AG5
A
1550 1563Right-handed alpha
Helix 60
AG6
A
1564 1571Right-handed alpha
Helix 61
AG7
A
1575 1605Right-handed alpha
Helix 62
AG8
A
1615 1631Right-handed alpha
Helix 63
AG9
A
1632 1641Right-handed 310
Helix 64
AH1
A
1643 1671Right-handed alpha
Helix 65
AH2
A
1675 1689Right-handed alpha
Helix 66
AH3
A
1691 1714Right-handed alpha
Helix 67
AH4
A
1730 1753Right-handed alpha
Helix 68
AH5
A
1775 1786Right-handed alpha
Helix 69
AH6
A
1833 1842Right-handed alpha
Helix 70
AH7
A
1862 1866Right-handed 310
Helix 71
AH8
A
1883 1895Right-handed alpha
Helix 72
AH9
A
1898 1912Right-handed alpha
Helix 73
AI1
A
1922 1926Right-handed 310
Helix 74
AI2
A
1927 1941Right-handed alpha
Helix 75
AI3
A
1957 1974Right-handed alpha
Helix 76
AI4
A
1985 1992Right-handed alpha
Helix 77
AI5
A
2008 2017Right-handed alpha
Helix 78
AI6
A
2030 2042Right-handed alpha
Helix 79
AI7
A
2067 2078Right-handed alpha
Helix 80
AI8
A
2094 2103Right-handed alpha
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There are 10 sheets in PDB entry 8Y1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
538 539anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
1472 1475parallel
Strand 4
A
1415 1418anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
412 414parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
462 467anti-parallel
Strand 3
A
1510 1514parallel
Strand 4
A
1269 1270anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 886first strand
Strand 2
A
960 963parallel
Strand 3
A
990 993parallel
Strand 4
A
836 840parallel
Strand 5
A
1007 1012parallel
Strand 6
A
1015 1020anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1095first strand
Strand 2
A
1098 1103anti-parallel
Strand 3
A
1033 1038anti-parallel
Strand 4
A
1133 1135anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1280 1282first strand
Strand 2
A
1378 1380parallel
Strand 3
A
1370 1372anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1815 1817first strand
Strand 2
A
1793 1796anti-parallel
Strand 3
A
1850 1853anti-parallel
Strand 4
A
1856 1857anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1869 1870first strand
Strand 2
A
1946 1950parallel
Strand 3
A
1977 1981parallel
Strand 4
A
1823 1827parallel
Strand 5
A
1995 1998parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2055 2058first strand
Strand 2
A
2021 2025anti-parallel
Strand 3
A
2085 2087anti-parallel
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