Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y1P entry

There is 1 chain in PDB entry 8Y1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 2104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 8Y1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 20Right-handed alpha
Helix 2
AA2
A
23 31Right-handed alpha
Helix 3
AA3
A
32 34Right-handed 310
Helix 4
AA4
A
38 44Right-handed alpha
Helix 5
AA5
A
62 65Right-handed 310
Helix 6
AA6
A
66 75Right-handed alpha
Helix 7
AA7
A
100 114Right-handed alpha
Helix 8
AA8
A
115 126Right-handed alpha
Helix 9
AA9
A
177 194Right-handed alpha
Helix 10
AB1
A
199 208Right-handed alpha
Helix 11
AB2
A
219 224Right-handed alpha
Helix 12
AB3
A
265 275Right-handed alpha
Helix 13
AB4
A
277 292Right-handed alpha
Helix 14
AB5
A
301 317Right-handed alpha
Helix 15
AB6
A
318 321Right-handed 310
Helix 16
AB7
A
322 337Right-handed alpha
Helix 17
AB8
A
347 352Right-handed alpha
Helix 18
AB9
A
377 383Right-handed alpha
Helix 19
AC1
A
389 400Right-handed alpha
Helix 20
AC2
A
417 430Right-handed alpha
Helix 21
AC3
A
496 501Right-handed alpha
Helix 22
AC4
A
502 520Right-handed alpha
Helix 23
AC5
A
540 545Right-handed alpha
Helix 24
AC6
A
551 556Right-handed alpha
Helix 25
AC7
A
558 575Right-handed alpha
Helix 26
AC8
A
578 583Right-handed alpha
Helix 27
AC9
A
588 600Right-handed alpha
Helix 28
AD1
A
601 606Right-handed alpha
Helix 29
AD2
A
610 617Right-handed alpha
Helix 30
AD3
A
624 633Right-handed alpha
Helix 31
AD4
A
639 644Right-handed alpha
Helix 32
AD5
A
645 648Right-handed 310
Helix 33
AD6
A
656 666Right-handed alpha
Helix 34
AD7
A
668 676Right-handed alpha
Helix 35
AD8
A
692 697Right-handed alpha
Helix 36
AD9
A
697 705Right-handed alpha
Helix 37
AE1
A
729 743Right-handed alpha
Helix 38
AE2
A
747 755Right-handed alpha
Helix 39
AE3
A
846 855Right-handed alpha
Helix 40
AE4
A
875 880Right-handed alpha
Helix 41
AE5
A
897 908Right-handed alpha
Helix 42
AE6
A
916 927Right-handed alpha
Helix 43
AE7
A
943 949Right-handed alpha
Helix 44
AE8
A
950 954Right-handed 310
Helix 45
AE9
A
971 985Right-handed alpha
Helix 46
AF1
A
997 1004Right-handed alpha
Helix 47
AF2
A
1021 1030Right-handed alpha
Helix 48
AF3
A
1074 1083Right-handed alpha
Helix 49
AF4
A
1107 1111Right-handed 310
Helix 50
AF5
A
1113 1122Right-handed alpha
Helix 51
AF6
A
1138 1151Right-handed alpha
Helix 52
AF7
A
1220 1235Right-handed alpha
Helix 53
AF8
A
1243 1257Right-handed alpha
Helix 54
AF9
A
1292 1305Right-handed alpha
Helix 55
AG1
A
1324 1332Right-handed alpha
Helix 56
AG2
A
1386 1394Right-handed alpha
Helix 57
AG3
A
1394 1399Right-handed alpha
Helix 58
AG4
A
1400 1404Right-handed 310
Helix 59
AG5
A
1430 1440Right-handed alpha
Helix 60
AG6
A
1451 1464Right-handed alpha
Helix 61
AG7
A
1477 1480Right-handed 310
Helix 62
AG8
A
1481 1496Right-handed alpha
Helix 63
AG9
A
1520 1532Right-handed alpha
Helix 64
AH1
A
1533 1549Right-handed alpha
Helix 65
AH2
A
1549 1559Right-handed alpha
Helix 66
AH3
A
1575 1605Right-handed alpha
Helix 67
AH4
A
1618 1631Right-handed alpha
Helix 68
AH5
A
1632 1638Right-handed 310
Helix 69
AH6
A
1647 1667Right-handed alpha
Helix 70
AH7
A
1677 1689Right-handed alpha
Helix 71
AH8
A
1697 1719Right-handed alpha
Helix 72
AH9
A
1732 1740Right-handed alpha
Helix 73
AI1
A
1742 1755Right-handed alpha
Helix 74
AI2
A
1833 1842Right-handed alpha
Helix 75
AI3
A
1861 1868Right-handed alpha
Helix 76
AI4
A
1884 1893Right-handed alpha
Helix 77
AI5
A
1900 1913Right-handed alpha
Helix 78
AI6
A
1914 1917Right-handed 310
Helix 79
AI7
A
1928 1940Right-handed alpha
Helix 80
AI8
A
1957 1972Right-handed alpha
Helix 81
AI9
A
1985 1991Right-handed alpha
Helix 82
AJ1
A
2008 2016Right-handed alpha
Helix 83
AJ2
A
2027 2042Right-handed alpha
Helix 84
AJ3
A
2062 2066Right-handed 310
Helix 85
AJ4
A
2069 2077Right-handed alpha
Helix 86
AJ5
A
2096 2102Right-handed alpha
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There are 10 sheets in PDB entry 8Y1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
537 539anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
1472 1475parallel
Strand 4
A
1415 1418anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
294 297parallel
Strand 3
A
434 438parallel
Strand 4
A
462 467anti-parallel
Strand 5
A
1510 1514parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
960 961first strand
Strand 2
A
990 991parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1012first strand
Strand 2
A
1015 1018anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1094first strand
Strand 2
A
1099 1102anti-parallel
Strand 3
A
1034 1038anti-parallel
Strand 4
A
1131 1135anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1279 1283first strand
Strand 2
A
1377 1381parallel
Strand 3
A
1370 1371anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1793 1794first strand
Strand 2
A
1816 1817anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1824 1825first strand
Strand 2
A
1995 1996parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2046 2051first strand
Strand 2
A
2054 2059anti-parallel
Strand 3
A
2020 2025anti-parallel
Strand 4
A
2085 2090anti-parallel
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