Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y1U entry

There are 4 chains in PDB entry 8Y1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12ASP 316
B
 ARG 1ARG 23
C
 MET 1LYS 104
D
 TYR 18PHE 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8Y1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
26 36Right-handed alpha
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
59 69Right-handed alpha
Helix 5
AA5
A
83 92Right-handed alpha
Helix 6
AA6
A
93 103Right-handed alpha
Helix 7
AA7
A
105 110Right-handed alpha
Helix 8
AA8
A
119 128Right-handed alpha
Helix 9
AA9
A
129 139Right-handed alpha
Helix 10
AB1
A
152 160Right-handed alpha
Helix 11
AB2
A
162 172Right-handed alpha
Helix 12
AB3
A
177 191Right-handed alpha
Helix 13
AB4
A
192 202Right-handed alpha
Helix 14
AB5
A
216 224Right-handed alpha
Helix 15
AB6
A
226 236Right-handed alpha
Helix 16
AB7
A
249 256Right-handed alpha
Helix 17
AB8
A
262 274Right-handed alpha
Helix 18
AB9
A
277 291Right-handed alpha
Helix 19
AC1
A
304 312Right-handed alpha
Helix 20
AC2
B
2 19Right-handed alpha
Helix 21
AC3
B
20 23Right-handed 310
Helix 22
AC4
C
100 104Right-handed 310
Helix 23
AC5
D
66 84Right-handed alpha
Helix 24
AC6
D
96 107Right-handed alpha
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There are no sheets in PDB entry 8Y1U
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il