Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y2D entry

There is 1 chain in PDB entry 8Y2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 68VAL 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8Y2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 78Right-handed alpha
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
85 93Right-handed alpha
Helix 4
AA4
A
98 125Right-handed alpha
Helix 5
AA5
A
129 134Right-handed 310
Helix 6
AA6
A
140 170Right-handed alpha
Helix 7
AA7
A
211 220Right-handed alpha
Helix 8
AA8
A
223 227Right-handed 310
Helix 9
AA9
A
237 255Right-handed alpha
Helix 10
AB1
A
267 287Right-handed alpha
Helix 11
AB2
A
289 298Right-handed alpha
Helix 12
AB3
A
309 323Right-handed alpha
Helix 13
AB4
A
327 334Right-handed alpha
Helix 14
AB5
A
341 375Right-handed alpha
Helix 15
AB6
A
378 382Right-handed 310
Helix 16
AB7
A
388 397Right-handed alpha
Helix 17
AB8
A
403 438Right-handed alpha
Helix 18
AB9
A
444 461Right-handed alpha
Helix 19
AC1
A
462 465Right-handed 310
Helix 20
AC2
A
467 479Right-handed alpha
Helix 21
AC3
A
480 498Right-handed alpha
Helix 22
AC4
A
500 512Right-handed alpha
Helix 23
AC5
A
517 542Right-handed alpha
Helix 24
AC6
A
554 570Right-handed alpha
Helix 25
AC7
A
570 583Right-handed alpha
Helix 26
AC8
A
586 596Right-handed alpha
Helix 27
AC9
A
600 606Right-handed alpha
Helix 28
AD1
A
609 613Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8Y2D.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
551 552anti-parallel
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