Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y2H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y2H entry

There are 8 chains in PDB entry 8Y2H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	LEU 286
A	TYR 72	PRO 86
F	ASP 5	LEU 286
C	TYR 72	PRO 86
G	ASP 5	LEU 286
D	TYR 72	PRO 86
H	ASP 5	LEU 286
E	TYR 72	PRO 86

There are 59 helices in PDB entry 8Y2H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	13	Right-handed 310
Helix 2	AA2	B	22	27	Right-handed alpha
Helix 3	AA3	B	28	32	Right-handed 310
Helix 4	AA4	B	34	52	Right-handed alpha
Helix 5	AA5	B	61	78	Right-handed alpha
Helix 6	AA6	B	79	85	Right-handed alpha
Helix 7	AA7	B	91	114	Right-handed alpha
Helix 8	AA8	B	125	129	Right-handed 310
Helix 9	AA9	B	130	146	Right-handed alpha
Helix 10	AB1	B	175	187	Right-handed alpha
Helix 11	AB2	B	221	226	Right-handed alpha
Helix 12	AB3	B	239	252	Right-handed alpha
Helix 13	AB4	B	265	273	Right-handed alpha
Helix 14	AB5	A	73	77	Right-handed alpha
Helix 15	AB6	A	79	84	Right-handed alpha
Helix 16	AB7	F	8	13	Right-handed 310
Helix 17	AB8	F	22	27	Right-handed alpha
Helix 18	AB9	F	28	32	Right-handed 310
Helix 19	AC1	F	34	52	Right-handed alpha
Helix 20	AC2	F	61	78	Right-handed alpha
Helix 21	AC3	F	79	85	Right-handed alpha
Helix 22	AC4	F	91	114	Right-handed alpha
Helix 23	AC5	F	125	129	Right-handed 310
Helix 24	AC6	F	130	146	Right-handed alpha
Helix 25	AC7	F	175	187	Right-handed alpha
Helix 26	AC8	F	239	252	Right-handed alpha
Helix 27	AC9	F	265	273	Right-handed alpha
Helix 28	AD1	C	73	77	Right-handed alpha
Helix 29	AD2	C	79	84	Right-handed alpha
Helix 30	AD3	G	8	13	Right-handed 310
Helix 31	AD4	G	22	27	Right-handed alpha
Helix 32	AD5	G	28	32	Right-handed 310
Helix 33	AD6	G	34	52	Right-handed alpha
Helix 34	AD7	G	61	78	Right-handed alpha
Helix 35	AD8	G	79	85	Right-handed alpha
Helix 36	AD9	G	91	114	Right-handed alpha
Helix 37	AE1	G	125	129	Right-handed 310
Helix 38	AE2	G	130	146	Right-handed alpha
Helix 39	AE3	G	175	187	Right-handed alpha
Helix 40	AE4	G	221	225	Right-handed 310
Helix 41	AE5	G	239	252	Right-handed alpha
Helix 42	AE6	G	265	273	Right-handed alpha
Helix 43	AE7	D	73	77	Right-handed alpha
Helix 44	AE8	D	79	84	Right-handed alpha
Helix 45	AE9	H	8	13	Right-handed 310
Helix 46	AF1	H	22	27	Right-handed alpha
Helix 47	AF2	H	28	32	Right-handed 310
Helix 48	AF3	H	34	52	Right-handed alpha
Helix 49	AF4	H	61	78	Right-handed alpha
Helix 50	AF5	H	79	85	Right-handed alpha
Helix 51	AF6	H	91	114	Right-handed alpha
Helix 52	AF7	H	125	129	Right-handed 310
Helix 53	AF8	H	130	146	Right-handed alpha
Helix 54	AF9	H	175	187	Right-handed alpha
Helix 55	AG1	H	221	225	Right-handed 310
Helix 56	AG2	H	239	252	Right-handed alpha
Helix 57	AG3	H	265	273	Right-handed alpha
Helix 58	AG4	E	73	77	Right-handed alpha
Helix 59	AG5	E	79	84	Right-handed alpha

There are 4 sheets in PDB entry 8Y2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	149	153	parallel
Strand 3	B	54	58	parallel
Strand 4	B	16	21	parallel
Strand 5	B	191	196	parallel
Strand 6	B	256	260	parallel
Strand 7	B	278	280	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	120	first strand
Strand 2	F	149	153	parallel
Strand 3	F	54	58	parallel
Strand 4	F	16	21	parallel
Strand 5	F	191	196	parallel
Strand 6	F	256	260	parallel
Strand 7	F	278	280	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	120	first strand
Strand 2	G	149	153	parallel
Strand 3	G	54	58	parallel
Strand 4	G	16	21	parallel
Strand 5	G	191	196	parallel
Strand 6	G	256	260	parallel
Strand 7	G	278	280	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	120	first strand
Strand 2	H	149	153	parallel
Strand 3	H	54	58	parallel
Strand 4	H	16	21	parallel
Strand 5	H	191	196	parallel
Strand 6	H	256	260	parallel
Strand 7	H	278	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y2H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y2H