Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y2N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y2N entry

There are 4 chains in PDB entry 8Y2N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 71ARG 385
B
 PRO 18MET 150
C
 ILE 71ARG 385
D
 PRO 18MET 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8Y2N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 82Right-handed alpha
Helix 2
AA2
A
84 101Right-handed alpha
Helix 3
AA3
A
109 115Right-handed alpha
Helix 4
AA4
A
129 160Right-handed alpha
Helix 5
AA5
A
167 196Right-handed alpha
Helix 6
AA6
A
203 207Right-handed 310
Helix 7
AA7
A
217 240Right-handed alpha
Helix 8
AA8
A
248 269Right-handed alpha
Helix 9
AA9
A
275 297Right-handed alpha
Helix 10
AB1
A
301 335Right-handed alpha
Helix 11
AB2
A
352 384Right-handed alpha
Helix 12
AB3
B
20 47Right-handed alpha
Helix 13
AB4
B
48 53Right-handed alpha
Helix 14
AB5
B
76 92Right-handed alpha
Helix 15
AB6
B
134 142Right-handed alpha
Helix 16
AB7
C
72 82Right-handed alpha
Helix 17
AB8
C
84 101Right-handed alpha
Helix 18
AB9
C
109 115Right-handed alpha
Helix 19
AC1
C
129 160Right-handed alpha
Helix 20
AC2
C
167 196Right-handed alpha
Helix 21
AC3
C
203 207Right-handed 310
Helix 22
AC4
C
217 240Right-handed alpha
Helix 23
AC5
C
248 269Right-handed alpha
Helix 24
AC6
C
275 297Right-handed alpha
Helix 25
AC7
C
301 335Right-handed alpha
Helix 26
AC8
C
352 384Right-handed alpha
Helix 27
AC9
D
20 47Right-handed alpha
Helix 28
AD1
D
48 53Right-handed alpha
Helix 29
AD2
D
76 92Right-handed alpha
Helix 30
AD3
D
134 142Right-handed alpha
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There are 2 sheets in PDB entry 8Y2N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
65 70anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
99 105anti-parallel
Strand 5
B
148 149anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 59first strand
Strand 2
D
65 70anti-parallel
Strand 3
D
125 131anti-parallel
Strand 4
D
99 105anti-parallel
Strand 5
D
148 149anti-parallel
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