Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y2O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y2O entry

There are 3 chains in PDB entry 8Y2O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 10GLN 1943
B
 ASP 10LEU 252
C
 G 1 C 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 8Y2O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
49 64Right-handed alpha
Helix 4
AA4
A
72 88Right-handed alpha
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
105 106Right-handed 310
Helix 7
AA7
A
107 109Right-handed 310
Helix 8
AA8
A
110 127Right-handed alpha
Helix 9
AA9
A
130 132Right-handed 310
Helix 10
AB1
A
133 144Right-handed alpha
Helix 11
AB2
A
148 158Right-handed alpha
Helix 12
AB3
A
158 180Right-handed alpha
Helix 13
AB4
A
183 207Right-handed alpha
Helix 14
AB5
A
221 240Right-handed alpha
Helix 15
AB6
A
244 263Right-handed alpha
Helix 16
AB7
A
265 267Right-handed 310
Helix 17
AB8
A
268 279Right-handed alpha
Helix 18
AB9
A
287 294Right-handed alpha
Helix 19
AC1
A
303 317Right-handed alpha
Helix 20
AC2
A
320 324Right-handed 310
Helix 21
AC3
A
325 347Right-handed alpha
Helix 22
AC4
A
349 372Right-handed alpha
Helix 23
AC5
A
375 383Right-handed alpha
Helix 24
AC6
A
386 400Right-handed alpha
Helix 25
AC7
A
404 426Right-handed alpha
Helix 26
AC8
A
434 445Right-handed alpha
Helix 27
AC9
A
451 466Right-handed alpha
Helix 28
AD1
A
466 474Right-handed alpha
Helix 29
AD2
A
476 484Right-handed alpha
Helix 30
AD3
A
485 487Right-handed 310
Helix 31
AD4
A
490 510Right-handed alpha
Helix 32
AD5
A
517 527Right-handed alpha
Helix 33
AD6
A
527 537Right-handed alpha
Helix 34
AD7
A
538 549Right-handed alpha
Helix 35
AD8
A
549 557Right-handed alpha
Helix 36
AD9
A
559 579Right-handed alpha
Helix 37
AE1
A
588 592Right-handed alpha
Helix 38
AE2
A
592 607Right-handed alpha
Helix 39
AE3
A
622 631Right-handed alpha
Helix 40
AE4
A
634 647Right-handed alpha
Helix 41
AE5
A
656 670Right-handed alpha
Helix 42
AE6
A
675 705Right-handed alpha
Helix 43
AE7
A
721 742Right-handed alpha
Helix 44
AE8
A
748 766Right-handed alpha
Helix 45
AE9
A
778 783Right-handed 310
Helix 46
AF1
A
784 794Right-handed alpha
Helix 47
AF2
A
795 797Right-handed 310
Helix 48
AF3
A
799 813Right-handed alpha
Helix 49
AF4
A
822 837Right-handed alpha
Helix 50
AF5
A
843 857Right-handed alpha
Helix 51
AF6
A
863 868Right-handed 310
Helix 52
AF7
A
880 910Right-handed alpha
Helix 53
AF8
A
910 917Right-handed alpha
Helix 54
AF9
A
920 934Right-handed alpha
Helix 55
AG1
A
935 939Right-handed 310
Helix 56
AG2
A
941 969Right-handed alpha
Helix 57
AG3
A
1045 1068Right-handed alpha
Helix 58
AG4
A
1069 1071Right-handed 310
Helix 59
AG5
A
1085 1099Right-handed alpha
Helix 60
AG6
A
1109 1126Right-handed alpha
Helix 61
AG7
A
1128 1133Right-handed alpha
Helix 62
AG8
A
1133 1148Right-handed alpha
Helix 63
AG9
A
1163 1174Right-handed alpha
Helix 64
AH1
A
1182 1196Right-handed alpha
Helix 65
AH2
A
1203 1220Right-handed alpha
Helix 66
AH3
A
1223 1229Right-handed 310
Helix 67
AH4
A
1230 1241Right-handed alpha
Helix 68
AH5
A
1246 1266Right-handed alpha
Helix 69
AH6
A
1282 1289Right-handed alpha
Helix 70
AH7
A
1291 1310Right-handed alpha
Helix 71
AH8
A
1319 1328Right-handed alpha
Helix 72
AH9
A
1346 1355Right-handed alpha
Helix 73
AI1
A
1359 1371Right-handed alpha
Helix 74
AI2
A
1372 1374Right-handed 310
Helix 75
AI3
A
1375 1377Right-handed 310
Helix 76
AI4
A
1378 1388Right-handed alpha
Helix 77
AI5
A
1399 1420Right-handed alpha
Helix 78
AI6
A
1427 1441Right-handed alpha
Helix 79
AI7
A
1442 1447Right-handed 310
Helix 80
AI8
A
1452 1473Right-handed alpha
Helix 81
AI9
A
1483 1496Right-handed alpha
Helix 82
AJ1
A
1497 1502Right-handed alpha
Helix 83
AJ2
A
1511 1532Right-handed alpha
Helix 84
AJ3
A
1544 1549Right-handed alpha
Helix 85
AJ4
A
1553 1572Right-handed alpha
Helix 86
AJ5
A
1581 1585Right-handed 310
Helix 87
AJ6
A
1587 1598Right-handed alpha
Helix 88
AJ7
A
1600 1614Right-handed alpha
Helix 89
AJ8
A
1615 1620Right-handed alpha
Helix 90
AJ9
A
1622 1627Right-handed alpha
Helix 91
AK1
A
1630 1645Right-handed alpha
Helix 92
AK2
A
1647 1668Right-handed alpha
Helix 93
AK3
A
1670 1675Right-handed alpha
Helix 94
AK4
A
1675 1690Right-handed alpha
Helix 95
AK5
A
1695 1709Right-handed alpha
Helix 96
AK6
A
1709 1714Right-handed alpha
Helix 97
AK7
A
1722 1737Right-handed alpha
Helix 98
AK8
A
1741 1757Right-handed alpha
Helix 99
AK9
A
1773 1792Right-handed alpha
Helix 100
AL1
A
1798 1808Right-handed alpha
Helix 101
AL2
A
1839 1859Right-handed alpha
Helix 102
AL3
A
1864 1888Right-handed alpha
Helix 103
AL4
A
1892 1897Right-handed alpha
Helix 104
AL5
A
1897 1922Right-handed alpha
Helix 105
AL6
A
1932 1943Right-handed alpha
Helix 106
AL7
B
11 19Right-handed alpha
Helix 107
AL8
B
25 37Right-handed alpha
Helix 108
AL9
B
53 63Right-handed alpha
Helix 109
AM1
B
94 103Right-handed alpha
Helix 110
AM2
B
124 147Right-handed alpha
Helix 111
AM3
B
163 173Right-handed alpha
Helix 112
AM4
B
228 238Right-handed alpha
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There are 2 sheets in PDB entry 8Y2O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1280 1281first strand
Strand 2
A
1330 1331parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
70 75parallel
Strand 3
B
44 48parallel
Strand 4
B
112 115parallel
Strand 5
B
152 158parallel
Strand 6
B
191 199anti-parallel
Strand 7
B
174 180anti-parallel
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