Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y2Z entry

There are 2 chains in PDB entry 8Y2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 545ARG 844
B
 MET 1LEU 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8Y2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
562 581Right-handed alpha
Helix 2
AA2
A
604 610Right-handed alpha
Helix 3
AA3
A
623 637Right-handed alpha
Helix 4
AA4
A
658 665Right-handed alpha
Helix 5
AA5
A
680 684Right-handed 310
Helix 6
AA6
A
689 700Right-handed alpha
Helix 7
AA7
A
713 719Right-handed alpha
Helix 8
AA8
A
767 778Right-handed alpha
Helix 9
AA9
A
788 800Right-handed alpha
Helix 10
AB1
A
801 806Right-handed 310
Helix 11
AB2
A
808 822Right-handed alpha
Helix 12
AB3
A
827 835Right-handed alpha
Helix 13
AB4
B
2 11Right-handed alpha
Helix 14
AB5
B
42 47Right-handed alpha
Helix 15
AB6
B
47 55Right-handed alpha
Helix 16
AB7
B
57 67Right-handed alpha
Helix 17
AB8
B
73 82Right-handed alpha
Helix 18
AB9
B
132 136Right-handed 310
Helix 19
AC1
B
137 140Right-handed 310
Helix 20
AC2
B
141 147Right-handed alpha
Helix 21
AC3
B
162 176Right-handed alpha
Helix 22
AC4
B
202 218Right-handed alpha
Helix 23
AC5
B
238 269Right-handed alpha
Helix 24
AC6
B
276 287Right-handed alpha
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There are 4 sheets in PDB entry 8Y2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 650first strand
Strand 2
A
615 619parallel
Strand 3
A
594 597parallel
Strand 4
A
672 678parallel
Strand 5
A
701 712parallel
Strand 6
A
836 843anti-parallel
Strand 7
A
780 787anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 727first strand
Strand 2
A
738 743anti-parallel
Strand 3
A
748 752anti-parallel
Strand 4
A
761 764anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
178 183anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
152 157anti-parallel
Strand 5
B
98 102parallel
Strand 6
B
87 88parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
230 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il