Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y30

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y30 entry

There are 2 chains in PDB entry 8Y30 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 756
B	MET 1	ASN 512

There are 94 helices in PDB entry 8Y30. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed alpha
Helix 2	AA2	A	28	38	Right-handed alpha
Helix 3	AA3	A	42	51	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	64	78	Right-handed alpha
Helix 6	AA6	A	89	106	Right-handed alpha
Helix 7	AA7	A	125	135	Right-handed alpha
Helix 8	AA8	A	149	159	Right-handed alpha
Helix 9	AA9	A	197	210	Right-handed alpha
Helix 10	AB1	A	215	228	Right-handed alpha
Helix 11	AB2	A	233	250	Right-handed alpha
Helix 12	AB3	A	252	263	Right-handed alpha
Helix 13	AB4	A	269	276	Right-handed alpha
Helix 14	AB5	A	277	288	Right-handed alpha
Helix 15	AB6	A	290	299	Right-handed alpha
Helix 16	AB7	A	301	340	Right-handed alpha
Helix 17	AB8	A	353	355	Right-handed 310
Helix 18	AB9	A	356	369	Right-handed alpha
Helix 19	AC1	A	395	402	Right-handed alpha
Helix 20	AC2	A	403	405	Right-handed 310
Helix 21	AC3	A	425	444	Right-handed alpha
Helix 22	AC4	A	457	461	Right-handed 310
Helix 23	AC5	A	462	469	Right-handed alpha
Helix 24	AC6	A	470	472	Right-handed 310
Helix 25	AC7	A	523	528	Right-handed alpha
Helix 26	AC8	A	570	574	Right-handed 310
Helix 27	AC9	A	620	629	Right-handed alpha
Helix 28	AD1	A	653	668	Right-handed alpha
Helix 29	AD2	A	672	683	Right-handed alpha
Helix 30	AD3	A	686	700	Right-handed alpha
Helix 31	AD4	A	724	740	Right-handed alpha
Helix 32	AD5	A	744	756	Right-handed alpha
Helix 33	AD6	B	18	25	Right-handed alpha
Helix 34	AD7	B	30	38	Right-handed alpha
Helix 35	AD8	B	44	51	Right-handed alpha
Helix 36	AD9	B	58	62	Right-handed 310
Helix 37	AE1	B	64	78	Right-handed alpha
Helix 38	AE2	B	89	106	Right-handed alpha
Helix 39	AE3	B	125	135	Right-handed alpha
Helix 40	AE4	B	149	159	Right-handed alpha
Helix 41	AE5	B	197	210	Right-handed alpha
Helix 42	AE6	B	215	228	Right-handed alpha
Helix 43	AE7	B	233	250	Right-handed alpha
Helix 44	AE8	B	252	263	Right-handed alpha
Helix 45	AE9	B	269	276	Right-handed alpha
Helix 46	AF1	B	276	288	Right-handed alpha
Helix 47	AF2	B	290	299	Right-handed alpha
Helix 48	AF3	B	301	339	Right-handed alpha
Helix 49	AF4	B	356	369	Right-handed alpha
Helix 50	AF5	B	395	401	Right-handed alpha
Helix 51	AF6	B	425	444	Right-handed alpha
Helix 52	AF7	B	462	469	Right-handed alpha
Helix 53	AF8	B	470	472	Right-handed 310
Helix 54	AF9	B	520	524	Right-handed 310
Helix 55	AG1	B	620	630	Right-handed alpha
Helix 56	AG2	B	653	667	Right-handed alpha
Helix 57	AG3	B	672	683	Right-handed alpha
Helix 58	AG4	B	686	700	Right-handed alpha
Helix 59	AG5	B	720	723	Right-handed 310
Helix 60	AG6	B	724	741	Right-handed alpha
Helix 61	AG7	B	744	756	Right-handed alpha
Helix 62	AG8	C	18	25	Right-handed alpha
Helix 63	AG9	C	28	37	Right-handed alpha
Helix 64	AH1	C	42	51	Right-handed alpha
Helix 65	AH2	C	58	62	Right-handed 310
Helix 66	AH3	C	64	78	Right-handed alpha
Helix 67	AH4	C	89	105	Right-handed alpha
Helix 68	AH5	C	125	135	Right-handed alpha
Helix 69	AH6	C	149	160	Right-handed alpha
Helix 70	AH7	C	197	210	Right-handed alpha
Helix 71	AH8	C	214	226	Right-handed alpha
Helix 72	AH9	C	233	250	Right-handed alpha
Helix 73	AI1	C	252	263	Right-handed alpha
Helix 74	AI2	C	269	276	Right-handed alpha
Helix 75	AI3	C	276	288	Right-handed alpha
Helix 76	AI4	C	290	299	Right-handed alpha
Helix 77	AI5	C	301	336	Right-handed alpha
Helix 78	AI6	C	353	355	Right-handed 310
Helix 79	AI7	C	356	369	Right-handed alpha
Helix 80	AI8	C	395	403	Right-handed alpha
Helix 81	AI9	C	403	408	Right-handed alpha
Helix 82	AJ1	C	422	424	Right-handed 310
Helix 83	AJ2	C	425	444	Right-handed alpha
Helix 84	AJ3	C	457	461	Right-handed 310
Helix 85	AJ4	C	462	469	Right-handed alpha
Helix 86	AJ5	C	470	472	Right-handed 310
Helix 87	AJ6	C	523	527	Right-handed 310
Helix 88	AJ7	C	620	630	Right-handed alpha
Helix 89	AJ8	C	653	665	Right-handed alpha
Helix 90	AJ9	C	672	683	Right-handed alpha
Helix 91	AK1	C	686	700	Right-handed alpha
Helix 92	AK2	C	720	723	Right-handed 310
Helix 93	AK3	C	724	741	Right-handed alpha
Helix 94	AK4	C	744	756	Right-handed alpha

There are 18 sheets in PDB entry 8Y30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	449	452	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	81	85	parallel
Strand 3	A	137	143	parallel
Strand 4	A	162	166	parallel
Strand 5	A	180	181	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	372	378	parallel
Strand 3	A	383	389	anti-parallel
Strand 4	A	416	421	anti-parallel
Strand 5	A	407	412	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	484	497	parallel
Strand 3	A	532	544	anti-parallel
Strand 4	A	547	559	anti-parallel
Strand 5	A	513	517	parallel
Strand 6	A	503	508	anti-parallel
Strand 7	A	484	497	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	566	first strand
Strand 2	A	635	641	parallel
Strand 3	A	611	616	parallel
Strand 4	A	583	587	parallel
Strand 5	A	598	600	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	671	first strand
Strand 2	A	709	712	anti-parallel
Strand 3	A	703	706	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	450	452	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	113	first strand
Strand 2	B	81	85	parallel
Strand 3	B	139	142	parallel
Strand 4	B	162	166	parallel
Strand 5	B	180	182	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	372	378	parallel
Strand 3	B	383	389	anti-parallel
Strand 4	B	416	421	anti-parallel
Strand 5	B	407	412	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	484	486	parallel
Strand 3	B	534	542	anti-parallel
Strand 4	B	549	558	anti-parallel
Strand 5	B	513	517	parallel
Strand 6	B	504	508	anti-parallel
Strand 7	B	491	495	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	566	first strand
Strand 2	B	635	641	parallel
Strand 3	B	611	616	parallel
Strand 4	B	584	587	parallel
Strand 5	B	598	600	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	671	first strand
Strand 2	B	709	712	anti-parallel
Strand 3	B	703	706	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	449	452	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	82	85	parallel
Strand 3	C	139	143	parallel
Strand 4	C	162	166	parallel
Strand 5	C	180	182	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	372	378	parallel
Strand 3	C	383	389	anti-parallel
Strand 4	C	417	421	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	456	first strand
Strand 2	C	484	489	parallel
Strand 3	C	533	544	anti-parallel
Strand 4	C	547	558	anti-parallel
Strand 5	C	513	517	parallel
Strand 6	C	503	508	anti-parallel
Strand 7	C	491	497	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	566	first strand
Strand 2	C	635	641	parallel
Strand 3	C	611	616	parallel
Strand 4	C	584	587	parallel
Strand 5	C	598	600	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	669	671	first strand
Strand 2	C	709	712	anti-parallel
Strand 3	C	703	706	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y30

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y30