Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y32


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y32 entry

There are 2 chains in PDB entry 8Y32 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASP 614
B
 THR 333PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 8Y32. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
37 51Right-handed alpha
Helix 3
AA3
A
55 81Right-handed alpha
Helix 4
AA4
A
90 102Right-handed alpha
Helix 5
AA5
A
109 115Right-handed alpha
Helix 6
AA6
A
115 129Right-handed alpha
Helix 7
AA7
A
145 154Right-handed alpha
Helix 8
AA8
A
157 165Right-handed alpha
Helix 9
AA9
A
166 191Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
197 204Right-handed alpha
Helix 12
AB3
A
217 229Right-handed alpha
Helix 13
AB4
A
232 251Right-handed alpha
Helix 14
AB5
A
274 278Right-handed 310
Helix 15
AB6
A
302 317Right-handed alpha
Helix 16
AB7
A
323 327Right-handed 310
Helix 17
AB8
A
364 384Right-handed alpha
Helix 18
AB9
A
388 392Right-handed 310
Helix 19
AC1
A
398 411Right-handed alpha
Helix 20
AC2
A
413 420Right-handed alpha
Helix 21
AC3
A
430 446Right-handed alpha
Helix 22
AC4
A
448 464Right-handed alpha
Helix 23
AC5
A
472 484Right-handed alpha
Helix 24
AC6
A
498 501Right-handed 310
Helix 25
AC7
A
502 507Right-handed alpha
Helix 26
AC8
A
511 532Right-handed alpha
Helix 27
AC9
A
546 558Right-handed alpha
Helix 28
AD1
A
564 573Right-handed alpha
Helix 29
AD2
A
580 587Right-handed alpha
Helix 30
AD3
A
587 598Right-handed alpha
Helix 31
AD4
B
336 341Right-handed alpha
Helix 32
AD5
B
367 371Right-handed 310
Helix 33
AD6
B
385 389Right-handed 310
Helix 34
AD7
B
407 411Right-handed 310
Helix 35
AD8
B
502 506Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8Y32. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
486 487parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
356 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
394 402anti-parallel
Strand 3
B
508 516anti-parallel
Strand 4
B
432 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 453first strand
Strand 2
B
493 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il