Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y34

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y34 entry

There are 2 chains in PDB entry 8Y34 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	ILE 1005
B	LEU 6	ILE 1005

There are108 helices in PDB entry 8Y34. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	50	55	Right-handed 310
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	97	109	Right-handed alpha
Helix 7	AA7	A	115	123	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	154	158	Right-handed 310
Helix 10	AB1	A	186	192	Right-handed alpha
Helix 11	AB2	A	192	197	Right-handed alpha
Helix 12	AB3	A	197	211	Right-handed alpha
Helix 13	AB4	A	222	235	Right-handed alpha
Helix 14	AB5	A	254	263	Right-handed alpha
Helix 15	AB6	A	281	298	Right-handed alpha
Helix 16	AB7	A	304	312	Right-handed alpha
Helix 17	AB8	A	312	317	Right-handed alpha
Helix 18	AB9	A	318	321	Right-handed 310
Helix 19	AC1	A	326	334	Right-handed alpha
Helix 20	AC2	A	355	364	Right-handed alpha
Helix 21	AC3	A	366	373	Right-handed alpha
Helix 22	AC4	A	374	392	Right-handed alpha
Helix 23	AC5	A	419	427	Right-handed alpha
Helix 24	AC6	A	431	445	Right-handed alpha
Helix 25	AC7	A	447	462	Right-handed alpha
Helix 26	AC8	A	468	492	Right-handed alpha
Helix 27	AC9	A	508	519	Right-handed alpha
Helix 28	AD1	A	539	546	Right-handed 310
Helix 29	AD2	A	547	550	Right-handed 310
Helix 30	AD3	A	551	566	Right-handed alpha
Helix 31	AD4	A	579	596	Right-handed alpha
Helix 32	AD5	A	600	604	Right-handed 310
Helix 33	AD6	A	605	626	Right-handed alpha
Helix 34	AD7	A	648	658	Right-handed alpha
Helix 35	AD8	A	660	671	Right-handed alpha
Helix 36	AD9	A	682	700	Right-handed alpha
Helix 37	AE1	A	705	723	Right-handed alpha
Helix 38	AE2	A	724	726	Right-handed 310
Helix 39	AE3	A	729	741	Right-handed alpha
Helix 40	AE4	A	750	762	Right-handed alpha
Helix 41	AE5	A	768	786	Right-handed alpha
Helix 42	AE6	A	800	813	Right-handed alpha
Helix 43	AE7	A	817	825	Right-handed alpha
Helix 44	AE8	A	831	841	Right-handed alpha
Helix 45	AE9	A	846	855	Right-handed alpha
Helix 46	AF1	A	861	872	Right-handed alpha
Helix 47	AF2	A	878	898	Right-handed alpha
Helix 48	AF3	A	912	922	Right-handed alpha
Helix 49	AF4	A	927	934	Right-handed 310
Helix 50	AF5	A	937	945	Right-handed alpha
Helix 51	AF6	A	963	972	Right-handed alpha
Helix 52	AF7	A	973	991	Right-handed alpha
Helix 53	AF8	A	994	1004	Right-handed alpha
Helix 54	AF9	B	7	21	Right-handed alpha
Helix 55	AG1	B	23	39	Right-handed alpha
Helix 56	AG2	B	47	53	Right-handed alpha
Helix 57	AG3	B	58	71	Right-handed alpha
Helix 58	AG4	B	82	95	Right-handed alpha
Helix 59	AG5	B	97	109	Right-handed alpha
Helix 60	AG6	B	115	123	Right-handed alpha
Helix 61	AG7	B	136	146	Right-handed alpha
Helix 62	AG8	B	190	194	Right-handed 310
Helix 63	AG9	B	198	211	Right-handed alpha
Helix 64	AH1	B	222	235	Right-handed alpha
Helix 65	AH2	B	254	264	Right-handed alpha
Helix 66	AH3	B	281	298	Right-handed alpha
Helix 67	AH4	B	304	317	Right-handed alpha
Helix 68	AH5	B	318	321	Right-handed 310
Helix 69	AH6	B	326	334	Right-handed alpha
Helix 70	AH7	B	355	366	Right-handed alpha
Helix 71	AH8	B	366	372	Right-handed alpha
Helix 72	AH9	B	374	392	Right-handed alpha
Helix 73	AI1	B	417	426	Right-handed alpha
Helix 74	AI2	B	431	445	Right-handed alpha
Helix 75	AI3	B	447	463	Right-handed alpha
Helix 76	AI4	B	468	492	Right-handed alpha
Helix 77	AI5	B	508	519	Right-handed alpha
Helix 78	AI6	B	524	530	Right-handed alpha
Helix 79	AI7	B	539	546	Right-handed 310
Helix 80	AI8	B	551	556	Right-handed alpha
Helix 81	AI9	B	558	563	Right-handed alpha
Helix 82	AJ1	B	579	596	Right-handed alpha
Helix 83	AJ2	B	600	604	Right-handed 310
Helix 84	AJ3	B	605	628	Right-handed alpha
Helix 85	AJ4	B	648	658	Right-handed alpha
Helix 86	AJ5	B	660	669	Right-handed alpha
Helix 87	AJ6	B	672	677	Right-handed alpha
Helix 88	AJ7	B	680	699	Right-handed alpha
Helix 89	AJ8	B	705	723	Right-handed alpha
Helix 90	AJ9	B	724	726	Right-handed 310
Helix 91	AK1	B	729	741	Right-handed alpha
Helix 92	AK2	B	750	765	Right-handed alpha
Helix 93	AK3	B	768	786	Right-handed alpha
Helix 94	AK4	B	800	812	Right-handed alpha
Helix 95	AK5	B	817	826	Right-handed alpha
Helix 96	AK6	B	831	840	Right-handed alpha
Helix 97	AK7	B	841	845	Right-handed 310
Helix 98	AK8	B	846	854	Right-handed alpha
Helix 99	AK9	B	855	857	Right-handed 310
Helix 100	AL1	B	881	898	Right-handed alpha
Helix 101	AL2	B	913	922	Right-handed alpha
Helix 102	AL3	B	929	933	Right-handed 310
Helix 103	AL4	B	937	944	Right-handed alpha
Helix 104	AL5	B	945	949	Right-handed 310
Helix 105	AL6	B	955	961	Right-handed 310
Helix 106	AL7	B	963	972	Right-handed alpha
Helix 107	AL8	B	974	990	Right-handed alpha
Helix 108	AL9	B	996	1001	Right-handed alpha

There are 7 sheets in PDB entry 8Y34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	212	213	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	168	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	269	270	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	42	44	parallel
Strand 3	B	212	218	parallel
Strand 4	B	244	247	parallel
Strand 5	B	267	270	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	168	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y34

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y34