Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y3H entry

There are 12 chains in PDB entry 8Y3H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 495
B	SER 1	THR 75
C	MET 1	ALA 495
D	SER 1	THR 75
E	MET 1	ALA 495
F	SER 1	THR 75
G	GLN 3	ALA 122
H	SER 2	GLN 112
I	GLN 3	ALA 122
J	SER 2	GLN 112
K	GLN 3	ALA 122
L	SER 2	GLN 112

There are 54 helices in PDB entry 8Y3H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	131	133	Right-handed 310
Helix 3	AA3	A	210	215	Right-handed alpha
Helix 4	AA4	A	233	236	Right-handed 310
Helix 5	AA5	A	256	264	Right-handed alpha
Helix 6	AA6	A	396	416	Right-handed alpha
Helix 7	AA7	A	417	422	Right-handed 310
Helix 8	AA8	A	427	449	Right-handed alpha
Helix 9	AA9	A	452	469	Right-handed alpha
Helix 10	AB1	A	472	492	Right-handed alpha
Helix 11	AB2	B	1	5	Right-handed 310
Helix 12	AB3	B	20	26	Right-handed alpha
Helix 13	AB4	B	26	39	Right-handed alpha
Helix 14	AB5	B	39	53	Right-handed alpha
Helix 15	AB6	B	56	74	Right-handed alpha
Helix 16	AB7	C	82	87	Right-handed 310
Helix 17	AB8	C	186	191	Right-handed alpha
Helix 18	AB9	C	192	194	Right-handed 310
Helix 19	AC1	C	210	215	Right-handed alpha
Helix 20	AC2	C	233	236	Right-handed 310
Helix 21	AC3	C	256	264	Right-handed alpha
Helix 22	AC4	C	382	386	Right-handed 310
Helix 23	AC5	C	396	415	Right-handed alpha
Helix 24	AC6	C	416	422	Right-handed 310
Helix 25	AC7	C	427	449	Right-handed alpha
Helix 26	AC8	C	452	469	Right-handed alpha
Helix 27	AC9	C	472	493	Right-handed alpha
Helix 28	AD1	D	1	5	Right-handed 310
Helix 29	AD2	D	20	25	Right-handed alpha
Helix 30	AD3	D	26	39	Right-handed alpha
Helix 31	AD4	D	39	54	Right-handed alpha
Helix 32	AD5	D	56	75	Right-handed alpha
Helix 33	AD6	E	82	87	Right-handed 310
Helix 34	AD7	E	131	133	Right-handed 310
Helix 35	AD8	E	187	190	Right-handed 310
Helix 36	AD9	E	192	194	Right-handed 310
Helix 37	AE1	E	210	215	Right-handed alpha
Helix 38	AE2	E	233	236	Right-handed 310
Helix 39	AE3	E	256	264	Right-handed alpha
Helix 40	AE4	E	396	415	Right-handed alpha
Helix 41	AE5	E	418	422	Right-handed 310
Helix 42	AE6	E	428	449	Right-handed alpha
Helix 43	AE7	E	452	469	Right-handed alpha
Helix 44	AE8	E	472	493	Right-handed alpha
Helix 45	AE9	F	1	5	Right-handed 310
Helix 46	AF1	F	20	39	Right-handed alpha
Helix 47	AF2	F	39	54	Right-handed alpha
Helix 48	AF3	F	56	74	Right-handed alpha
Helix 49	AF4	H	80	84	Right-handed 310
Helix 50	AF5	I	87	91	Right-handed 310
Helix 51	AF6	J	80	84	Right-handed 310
Helix 52	AF7	K	25	31	Right-handed alpha
Helix 53	AF8	K	62	65	Right-handed 310
Helix 54	AF9	L	80	84	Right-handed 310

There are 45 sheets in PDB entry 8Y3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	277	278	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	179	185	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	72	anti-parallel
Strand 4	A	220	221	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	196	200	anti-parallel
Strand 4	A	205	209	anti-parallel
Strand 5	A	268	270	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	249	252	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	314	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	365	370	anti-parallel
Strand 4	A	347	351	anti-parallel
Strand 5	A	337	340	anti-parallel
Strand 6	A	374	380	anti-parallel
Strand 7	A	387	393	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	357	358	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	137	143	anti-parallel
Strand 5	C	160	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	277	278	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	282	288	anti-parallel
Strand 3	C	179	185	anti-parallel
Strand 4	C	170	175	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	98	first strand
Strand 2	C	110	129	anti-parallel
Strand 3	C	54	73	anti-parallel
Strand 4	C	220	221	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	98	first strand
Strand 2	C	110	129	anti-parallel
Strand 3	C	196	200	anti-parallel
Strand 4	C	205	209	anti-parallel
Strand 5	C	268	270	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	249	252	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	333	334	parallel
Strand 3	C	357	358	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	314	first strand
Strand 2	C	320	327	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	387	393	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	142	anti-parallel
Strand 5	E	160	164	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	276	277	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	282	288	anti-parallel
Strand 3	E	180	185	anti-parallel
Strand 4	E	170	174	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	126	129	anti-parallel
Strand 3	E	196	200	anti-parallel
Strand 4	E	205	209	anti-parallel
Strand 5	E	268	270	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	65	first strand
Strand 2	E	109	124	anti-parallel
Strand 3	E	69	72	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	65	first strand
Strand 2	E	109	124	anti-parallel
Strand 3	E	90	99	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	249	252	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	314	first strand
Strand 2	E	320	327	anti-parallel
Strand 3	E	365	369	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	357	358	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	340	first strand
Strand 2	E	375	380	anti-parallel
Strand 3	E	387	392	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	47	51	anti-parallel
Strand 6	G	59	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	110	111	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	78	83	anti-parallel
Strand 3	G	68	73	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	86	93	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	46	49	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	86	93	anti-parallel
Strand 4	H	98	101	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	71	76	anti-parallel
Strand 3	H	63	67	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	115	119	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	32	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	115	119	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	110	111	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	78	83	anti-parallel
Strand 3	I	68	73	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	106	109	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	71	76	anti-parallel
Strand 3	J	63	67	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	49	first strand
Strand 2	J	35	39	anti-parallel
Strand 3	J	86	93	anti-parallel
Strand 4	J	98	101	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	6	first strand
Strand 2	K	18	23	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	100	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	100	anti-parallel
Strand 4	K	110	111	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	98	100	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y3H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3H