Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y3I entry

There are 7 chains in PDB entry 8Y3I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 495
B	SER 1	THR 75
C	MET 1	ALA 495
D	SER 1	THR 75
E	MET 1	ALA 495
F	SER 1	THR 75
G	GLU 1	GLU 1

There are 58 helices in PDB entry 8Y3I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	131	133	Right-handed 310
Helix 3	AA3	A	186	191	Right-handed alpha
Helix 4	AA4	A	192	194	Right-handed 310
Helix 5	AA5	A	210	215	Right-handed alpha
Helix 6	AA6	A	233	236	Right-handed 310
Helix 7	AA7	A	258	264	Right-handed alpha
Helix 8	AA8	A	396	416	Right-handed alpha
Helix 9	AA9	A	417	422	Right-handed 310
Helix 10	AB1	A	427	448	Right-handed alpha
Helix 11	AB2	A	452	469	Right-handed alpha
Helix 12	AB3	A	472	493	Right-handed alpha
Helix 13	AB4	B	20	25	Right-handed alpha
Helix 14	AB5	B	26	39	Right-handed alpha
Helix 15	AB6	B	39	53	Right-handed alpha
Helix 16	AB7	B	56	74	Right-handed alpha
Helix 17	AB8	C	1	5	Right-handed 310
Helix 18	AB9	C	82	86	Right-handed 310
Helix 19	AC1	C	131	133	Right-handed 310
Helix 20	AC2	C	186	190	Right-handed 310
Helix 21	AC3	C	210	215	Right-handed alpha
Helix 22	AC4	C	233	238	Right-handed 310
Helix 23	AC5	C	256	264	Right-handed alpha
Helix 24	AC6	C	396	415	Right-handed alpha
Helix 25	AC7	C	416	422	Right-handed 310
Helix 26	AC8	C	427	449	Right-handed alpha
Helix 27	AC9	C	452	470	Right-handed alpha
Helix 28	AD1	C	472	493	Right-handed alpha
Helix 29	AD2	D	1	5	Right-handed 310
Helix 30	AD3	D	20	25	Right-handed alpha
Helix 31	AD4	D	26	39	Right-handed alpha
Helix 32	AD5	D	39	54	Right-handed alpha
Helix 33	AD6	D	56	75	Right-handed alpha
Helix 34	AD7	E	82	87	Right-handed 310
Helix 35	AD8	E	131	133	Right-handed 310
Helix 36	AD9	E	186	191	Right-handed alpha
Helix 37	AE1	E	210	215	Right-handed alpha
Helix 38	AE2	E	233	236	Right-handed 310
Helix 39	AE3	E	242	246	Right-handed 310
Helix 40	AE4	E	256	264	Right-handed alpha
Helix 41	AE5	E	396	415	Right-handed alpha
Helix 42	AE6	E	418	422	Right-handed 310
Helix 43	AE7	E	427	448	Right-handed alpha
Helix 44	AE8	E	452	469	Right-handed alpha
Helix 45	AE9	E	472	493	Right-handed alpha
Helix 46	AF1	F	1	5	Right-handed 310
Helix 47	AF2	F	20	26	Right-handed alpha
Helix 48	AF3	F	26	39	Right-handed alpha
Helix 49	AF4	F	39	53	Right-handed alpha
Helix 50	AF5	F	56	74	Right-handed alpha
Helix 51	AF6	G	28	30	Right-handed 310
Helix 52	AF7	G	64	66	Right-handed 310
Helix 53	AF8	G	87	91	Right-handed 310
Helix 54	AF9	I	87	91	Right-handed 310
Helix 55	AG1	K	28	30	Right-handed 310
Helix 56	AG2	K	62	65	Right-handed 310
Helix 57	AG3	K	87	91	Right-handed 310
Helix 58	AG4	L	81	85	Right-handed 310

There are 42 sheets in PDB entry 8Y3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	276	278	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	170	174	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	72	anti-parallel
Strand 4	A	220	222	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	196	200	anti-parallel
Strand 4	A	205	209	anti-parallel
Strand 5	A	268	270	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	320	326	anti-parallel
Strand 4	A	306	314	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	347	351	anti-parallel
Strand 4	A	337	340	anti-parallel
Strand 5	A	375	380	anti-parallel
Strand 6	A	387	392	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	249	252	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	357	358	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	160	164	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	277	278	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	284	288	anti-parallel
Strand 3	C	179	184	anti-parallel
Strand 4	C	170	175	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	54	72	anti-parallel
Strand 4	C	220	221	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	196	201	anti-parallel
Strand 4	C	204	209	anti-parallel
Strand 5	C	268	270	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	249	251	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	314	first strand
Strand 2	C	320	327	anti-parallel
Strand 3	C	366	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	357	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	387	393	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	160	164	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	276	278	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	282	288	anti-parallel
Strand 3	E	180	185	anti-parallel
Strand 4	E	170	174	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	54	65	anti-parallel
Strand 4	E	220	221	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	196	200	anti-parallel
Strand 4	E	205	209	anti-parallel
Strand 5	E	268	269	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	249	252	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	314	first strand
Strand 2	E	320	327	anti-parallel
Strand 3	E	365	370	anti-parallel
Strand 4	E	347	351	anti-parallel
Strand 5	E	337	340	anti-parallel
Strand 6	E	374	380	anti-parallel
Strand 7	E	387	393	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	357	358	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	122	125	parallel
Strand 3	G	92	95	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	122	125	parallel
Strand 3	G	92	95	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	98	100	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	47	50	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	99	101	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	20	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	122	125	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	32	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	105	109	parallel
Strand 3	J	87	93	anti-parallel
Strand 4	J	36	40	anti-parallel
Strand 5	J	47	50	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	105	109	parallel
Strand 3	J	87	93	anti-parallel
Strand 4	J	99	101	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	72	77	anti-parallel
Strand 3	J	64	69	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	122	125	parallel
Strand 3	K	92	100	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	45	52	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	105	107	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	105	107	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y3I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3I