Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y3J entry

There are 6 chains in PDB entry 8Y3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 495
B	SER 1	THR 75
C	MET 1	ALA 495
D	SER 1	THR 75
E	MET 1	ALA 495
F	SER 1	THR 75

There are 52 helices in PDB entry 8Y3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	133	Right-handed 310
Helix 4	AA4	A	186	191	Right-handed alpha
Helix 5	AA5	A	210	215	Right-handed alpha
Helix 6	AA6	A	233	236	Right-handed 310
Helix 7	AA7	A	256	264	Right-handed alpha
Helix 8	AA8	A	396	416	Right-handed alpha
Helix 9	AA9	A	417	422	Right-handed 310
Helix 10	AB1	A	427	448	Right-handed alpha
Helix 11	AB2	A	452	469	Right-handed alpha
Helix 12	AB3	A	472	492	Right-handed alpha
Helix 13	AB4	B	1	5	Right-handed 310
Helix 14	AB5	B	20	26	Right-handed alpha
Helix 15	AB6	B	26	39	Right-handed alpha
Helix 16	AB7	B	39	54	Right-handed alpha
Helix 17	AB8	B	56	75	Right-handed alpha
Helix 18	AB9	C	82	87	Right-handed 310
Helix 19	AC1	C	131	133	Right-handed 310
Helix 20	AC2	C	147	151	Right-handed 310
Helix 21	AC3	C	186	191	Right-handed alpha
Helix 22	AC4	C	210	215	Right-handed alpha
Helix 23	AC5	C	233	237	Right-handed 310
Helix 24	AC6	C	256	264	Right-handed alpha
Helix 25	AC7	C	382	386	Right-handed 310
Helix 26	AC8	C	396	416	Right-handed alpha
Helix 27	AC9	C	417	422	Right-handed 310
Helix 28	AD1	C	427	448	Right-handed alpha
Helix 29	AD2	C	452	469	Right-handed alpha
Helix 30	AD3	C	472	493	Right-handed alpha
Helix 31	AD4	D	1	5	Right-handed 310
Helix 32	AD5	D	20	25	Right-handed alpha
Helix 33	AD6	D	26	39	Right-handed alpha
Helix 34	AD7	D	39	54	Right-handed alpha
Helix 35	AD8	D	56	75	Right-handed alpha
Helix 36	AD9	E	82	87	Right-handed 310
Helix 37	AE1	E	131	133	Right-handed 310
Helix 38	AE2	E	147	151	Right-handed 310
Helix 39	AE3	E	186	190	Right-handed 310
Helix 40	AE4	E	192	194	Right-handed 310
Helix 41	AE5	E	210	215	Right-handed alpha
Helix 42	AE6	E	233	236	Right-handed 310
Helix 43	AE7	E	256	264	Right-handed alpha
Helix 44	AE8	E	396	416	Right-handed alpha
Helix 45	AE9	E	417	422	Right-handed 310
Helix 46	AF1	E	427	449	Right-handed alpha
Helix 47	AF2	E	452	469	Right-handed alpha
Helix 48	AF3	E	472	493	Right-handed alpha
Helix 49	AF4	F	1	5	Right-handed 310
Helix 50	AF5	F	20	39	Right-handed alpha
Helix 51	AF6	F	39	54	Right-handed alpha
Helix 52	AF7	F	56	75	Right-handed alpha

There are 27 sheets in PDB entry 8Y3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	160	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	276	277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	282	288	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	72	anti-parallel
Strand 4	A	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	196	201	anti-parallel
Strand 4	A	204	209	anti-parallel
Strand 5	A	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	175	first strand
Strand 2	A	179	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	249	252	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	314	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	365	370	anti-parallel
Strand 4	A	350	351	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	375	380	anti-parallel
Strand 3	A	387	392	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	160	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	277	278	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	284	288	anti-parallel
Strand 3	C	179	185	anti-parallel
Strand 4	C	170	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	54	72	anti-parallel
Strand 4	C	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	196	201	anti-parallel
Strand 4	C	204	209	anti-parallel
Strand 5	C	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	249	251	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	333	334	parallel
Strand 3	C	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	314	first strand
Strand 2	C	320	326	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	350	351	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	387	393	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	160	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	276	278	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	282	288	anti-parallel
Strand 3	E	180	184	anti-parallel
Strand 4	E	170	174	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	54	72	anti-parallel
Strand 4	E	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	196	201	anti-parallel
Strand 4	E	204	209	anti-parallel
Strand 5	E	269	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	249	252	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	314	first strand
Strand 2	E	320	326	anti-parallel
Strand 3	E	365	370	anti-parallel
Strand 4	E	347	351	anti-parallel
Strand 5	E	337	340	anti-parallel
Strand 6	E	375	380	anti-parallel
Strand 7	E	387	392	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	357	358	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3J