Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y3U entry

There are 12 chains in PDB entry 8Y3U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	SER 124
B	ILE 239	LYS 343
C	VAL 503	ALA 599
D	SER 32	ALA 188
E	GLU 1	SER 124
F	ILE 239	LYS 343
G	VAL 503	ALA 599
H	SER 32	ALA 188
I	GLU 1	SER 124
J	ILE 239	LYS 343
K	VAL 503	ALA 599
L	SER 32	LEU 186

There are 19 helices in PDB entry 8Y3U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	C	557	575	Right-handed alpha
Helix 3	AA3	C	583	597	Right-handed alpha
Helix 4	AA4	D	59	61	Right-handed 310
Helix 5	AA5	D	71	74	Right-handed 310
Helix 6	AA6	D	78	84	Right-handed 310
Helix 7	AA7	E	28	32	Right-handed 310
Helix 8	AA8	E	62	65	Right-handed 310
Helix 9	AA9	E	87	91	Right-handed 310
Helix 10	AB1	G	553	575	Right-handed alpha
Helix 11	AB2	G	583	597	Right-handed alpha
Helix 12	AB3	H	71	74	Right-handed 310
Helix 13	AB4	H	82	84	Right-handed 310
Helix 14	AB5	I	28	32	Right-handed 310
Helix 15	AB6	I	61	65	Right-handed 310
Helix 16	AB7	K	553	575	Right-handed alpha
Helix 17	AB8	K	583	597	Right-handed alpha
Helix 18	AB9	L	71	74	Right-handed 310
Helix 19	AC1	L	78	84	Right-handed 310

There are 34 sheets in PDB entry 8Y3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	78	84	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	118	122	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	118	122	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	111	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	256	262	anti-parallel
Strand 3	B	307	312	anti-parallel
Strand 4	B	299	304	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	339	341	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	322	327	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	544	545	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	36	39	anti-parallel
Strand 3	D	177	185	parallel
Strand 4	D	63	69	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	36	39	anti-parallel
Strand 3	D	177	185	parallel
Strand 4	D	159	161	anti-parallel
Strand 5	D	165	167	anti-parallel
Strand 6	D	96	98	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	151	154	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	114	first strand
Strand 2	D	135	144	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	111	114	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	244	first strand
Strand 2	F	256	261	anti-parallel
Strand 3	F	307	312	anti-parallel
Strand 4	F	300	304	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	249	first strand
Strand 2	F	339	341	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	286	first strand
Strand 2	F	270	275	anti-parallel
Strand 3	F	322	327	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	514	515	first strand
Strand 2	G	548	549	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	518	519	first strand
Strand 2	G	544	545	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	580	581	first strand
Strand 2	H	96	98	parallel
Strand 3	H	165	167	anti-parallel
Strand 4	H	159	161	anti-parallel
Strand 5	H	177	185	anti-parallel
Strand 6	H	35	39	parallel
Strand 7	H	42	46	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	580	581	first strand
Strand 2	H	96	98	parallel
Strand 3	H	165	167	anti-parallel
Strand 4	H	159	161	anti-parallel
Strand 5	H	177	185	anti-parallel
Strand 6	H	63	69	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	89	first strand
Strand 2	H	151	154	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	114	first strand
Strand 2	H	139	144	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	111	113	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	241	244	first strand
Strand 2	J	256	262	anti-parallel
Strand 3	J	307	312	anti-parallel
Strand 4	J	299	304	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	247	249	first strand
Strand 2	J	338	341	parallel
Strand 3	J	322	327	anti-parallel
Strand 4	J	270	275	anti-parallel
Strand 5	J	282	286	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	514	515	first strand
Strand 2	K	548	549	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	518	519	first strand
Strand 2	K	544	545	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	45	first strand
Strand 2	L	36	39	anti-parallel
Strand 3	L	177	185	parallel
Strand 4	L	63	69	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	45	first strand
Strand 2	L	36	39	anti-parallel
Strand 3	L	177	185	parallel
Strand 4	L	159	161	anti-parallel
Strand 5	L	165	167	anti-parallel
Strand 6	L	97	98	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	86	89	first strand
Strand 2	L	151	154	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	105	114	first strand
Strand 2	L	135	144	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y3U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3U