Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y3W entry

There are 6 chains in PDB entry 8Y3W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	ILE 1005
B	LEU 6	ILE 1005
C	GLY 9	LEU 119
D	GLY 12	ILE 1005
E	LEU 6	ILE 1005
F	GLY 9	LEU 119

There are219 helices in PDB entry 8Y3W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	21	Right-handed alpha
Helix 2	AA2	A	23	40	Right-handed alpha
Helix 3	AA3	A	47	52	Right-handed alpha
Helix 4	AA4	A	53	55	Right-handed 310
Helix 5	AA5	A	58	69	Right-handed alpha
Helix 6	AA6	A	82	95	Right-handed alpha
Helix 7	AA7	A	96	108	Right-handed alpha
Helix 8	AA8	A	115	122	Right-handed alpha
Helix 9	AA9	A	137	145	Right-handed alpha
Helix 10	AB1	A	155	160	Right-handed alpha
Helix 11	AB2	A	186	190	Right-handed 310
Helix 12	AB3	A	192	197	Right-handed alpha
Helix 13	AB4	A	197	210	Right-handed alpha
Helix 14	AB5	A	222	235	Right-handed alpha
Helix 15	AB6	A	254	264	Right-handed alpha
Helix 16	AB7	A	282	298	Right-handed alpha
Helix 17	AB8	A	304	317	Right-handed alpha
Helix 18	AB9	A	318	321	Right-handed 310
Helix 19	AC1	A	328	334	Right-handed alpha
Helix 20	AC2	A	355	366	Right-handed alpha
Helix 21	AC3	A	366	372	Right-handed alpha
Helix 22	AC4	A	374	391	Right-handed alpha
Helix 23	AC5	A	417	426	Right-handed alpha
Helix 24	AC6	A	431	445	Right-handed alpha
Helix 25	AC7	A	447	461	Right-handed alpha
Helix 26	AC8	A	468	491	Right-handed alpha
Helix 27	AC9	A	510	519	Right-handed alpha
Helix 28	AD1	A	523	531	Right-handed 310
Helix 29	AD2	A	533	537	Right-handed 310
Helix 30	AD3	A	539	547	Right-handed 310
Helix 31	AD4	A	551	563	Right-handed alpha
Helix 32	AD5	A	579	598	Right-handed alpha
Helix 33	AD6	A	600	604	Right-handed 310
Helix 34	AD7	A	605	628	Right-handed alpha
Helix 35	AD8	A	648	659	Right-handed alpha
Helix 36	AD9	A	660	669	Right-handed alpha
Helix 37	AE1	A	672	676	Right-handed 310
Helix 38	AE2	A	680	699	Right-handed alpha
Helix 39	AE3	A	705	723	Right-handed alpha
Helix 40	AE4	A	729	742	Right-handed alpha
Helix 41	AE5	A	752	765	Right-handed alpha
Helix 42	AE6	A	768	785	Right-handed alpha
Helix 43	AE7	A	800	812	Right-handed alpha
Helix 44	AE8	A	818	826	Right-handed alpha
Helix 45	AE9	A	831	841	Right-handed alpha
Helix 46	AF1	A	846	856	Right-handed alpha
Helix 47	AF2	A	872	876	Right-handed 310
Helix 48	AF3	A	878	895	Right-handed alpha
Helix 49	AF4	A	911	922	Right-handed alpha
Helix 50	AF5	A	928	934	Right-handed 310
Helix 51	AF6	A	937	945	Right-handed alpha
Helix 52	AF7	A	963	971	Right-handed alpha
Helix 53	AF8	A	976	991	Right-handed alpha
Helix 54	AF9	A	994	1003	Right-handed alpha
Helix 55	AG1	B	10	21	Right-handed alpha
Helix 56	AG2	B	23	40	Right-handed alpha
Helix 57	AG3	B	47	52	Right-handed alpha
Helix 58	AG4	B	53	55	Right-handed 310
Helix 59	AG5	B	58	69	Right-handed alpha
Helix 60	AG6	B	82	95	Right-handed alpha
Helix 61	AG7	B	96	108	Right-handed alpha
Helix 62	AG8	B	115	122	Right-handed alpha
Helix 63	AG9	B	137	145	Right-handed alpha
Helix 64	AH1	B	155	160	Right-handed alpha
Helix 65	AH2	B	186	190	Right-handed 310
Helix 66	AH3	B	192	197	Right-handed alpha
Helix 67	AH4	B	197	210	Right-handed alpha
Helix 68	AH5	B	222	235	Right-handed alpha
Helix 69	AH6	B	254	264	Right-handed alpha
Helix 70	AH7	B	282	298	Right-handed alpha
Helix 71	AH8	B	304	317	Right-handed alpha
Helix 72	AH9	B	318	321	Right-handed 310
Helix 73	AI1	B	328	334	Right-handed alpha
Helix 74	AI2	B	355	366	Right-handed alpha
Helix 75	AI3	B	366	372	Right-handed alpha
Helix 76	AI4	B	374	391	Right-handed alpha
Helix 77	AI5	B	417	426	Right-handed alpha
Helix 78	AI6	B	431	445	Right-handed alpha
Helix 79	AI7	B	447	461	Right-handed alpha
Helix 80	AI8	B	468	492	Right-handed alpha
Helix 81	AI9	B	510	519	Right-handed alpha
Helix 82	AJ1	B	523	531	Right-handed 310
Helix 83	AJ2	B	533	537	Right-handed 310
Helix 84	AJ3	B	539	547	Right-handed 310
Helix 85	AJ4	B	551	563	Right-handed alpha
Helix 86	AJ5	B	579	598	Right-handed alpha
Helix 87	AJ6	B	600	604	Right-handed 310
Helix 88	AJ7	B	605	628	Right-handed alpha
Helix 89	AJ8	B	648	659	Right-handed alpha
Helix 90	AJ9	B	660	669	Right-handed alpha
Helix 91	AK1	B	672	676	Right-handed 310
Helix 92	AK2	B	680	699	Right-handed alpha
Helix 93	AK3	B	705	723	Right-handed alpha
Helix 94	AK4	B	729	742	Right-handed alpha
Helix 95	AK5	B	752	765	Right-handed alpha
Helix 96	AK6	B	768	785	Right-handed alpha
Helix 97	AK7	B	800	812	Right-handed alpha
Helix 98	AK8	B	818	826	Right-handed alpha
Helix 99	AK9	B	831	841	Right-handed alpha
Helix 100	AL1	B	846	856	Right-handed alpha
Helix 101	AL2	B	872	876	Right-handed 310
Helix 102	AL3	B	878	895	Right-handed alpha
Helix 103	AL4	B	913	922	Right-handed alpha
Helix 104	AL5	B	928	934	Right-handed 310
Helix 105	AL6	B	937	945	Right-handed alpha
Helix 106	AL7	B	963	971	Right-handed alpha
Helix 107	AL8	B	976	991	Right-handed alpha
Helix 108	AL9	B	994	1003	Right-handed alpha
Helix 109	AM1	C	95	106	Right-handed alpha
Helix 110	AM2	D	13	21	Right-handed alpha
Helix 111	AM3	D	23	40	Right-handed alpha
Helix 112	AM4	D	47	52	Right-handed alpha
Helix 113	AM5	D	53	55	Right-handed 310
Helix 114	AM6	D	58	69	Right-handed alpha
Helix 115	AM7	D	82	95	Right-handed alpha
Helix 116	AM8	D	96	108	Right-handed alpha
Helix 117	AM9	D	115	122	Right-handed alpha
Helix 118	AN1	D	137	145	Right-handed alpha
Helix 119	AN2	D	155	160	Right-handed alpha
Helix 120	AN3	D	186	190	Right-handed 310
Helix 121	AN4	D	192	197	Right-handed alpha
Helix 122	AN5	D	197	210	Right-handed alpha
Helix 123	AN6	D	222	235	Right-handed alpha
Helix 124	AN7	D	254	264	Right-handed alpha
Helix 125	AN8	D	282	298	Right-handed alpha
Helix 126	AN9	D	304	317	Right-handed alpha
Helix 127	AO1	D	318	321	Right-handed 310
Helix 128	AO2	D	328	334	Right-handed alpha
Helix 129	AO3	D	355	366	Right-handed alpha
Helix 130	AO4	D	366	372	Right-handed alpha
Helix 131	AO5	D	374	391	Right-handed alpha
Helix 132	AO6	D	417	426	Right-handed alpha
Helix 133	AO7	D	431	445	Right-handed alpha
Helix 134	AO8	D	447	461	Right-handed alpha
Helix 135	AO9	D	468	491	Right-handed alpha
Helix 136	AP1	D	510	519	Right-handed alpha
Helix 137	AP2	D	523	531	Right-handed 310
Helix 138	AP3	D	533	537	Right-handed 310
Helix 139	AP4	D	539	547	Right-handed 310
Helix 140	AP5	D	551	563	Right-handed alpha
Helix 141	AP6	D	567	572	Right-handed alpha
Helix 142	AP7	D	579	598	Right-handed alpha
Helix 143	AP8	D	600	604	Right-handed 310
Helix 144	AP9	D	605	628	Right-handed alpha
Helix 145	AQ1	D	648	659	Right-handed alpha
Helix 146	AQ2	D	660	669	Right-handed alpha
Helix 147	AQ3	D	672	676	Right-handed 310
Helix 148	AQ4	D	680	699	Right-handed alpha
Helix 149	AQ5	D	705	723	Right-handed alpha
Helix 150	AQ6	D	729	742	Right-handed alpha
Helix 151	AQ7	D	752	765	Right-handed alpha
Helix 152	AQ8	D	768	785	Right-handed alpha
Helix 153	AQ9	D	800	812	Right-handed alpha
Helix 154	AR1	D	818	826	Right-handed alpha
Helix 155	AR2	D	831	841	Right-handed alpha
Helix 156	AR3	D	846	856	Right-handed alpha
Helix 157	AR4	D	872	876	Right-handed 310
Helix 158	AR5	D	878	895	Right-handed alpha
Helix 159	AR6	D	912	922	Right-handed alpha
Helix 160	AR7	D	928	934	Right-handed 310
Helix 161	AR8	D	937	945	Right-handed alpha
Helix 162	AR9	D	963	971	Right-handed alpha
Helix 163	AS1	D	976	991	Right-handed alpha
Helix 164	AS2	D	994	1003	Right-handed alpha
Helix 165	AS3	E	10	21	Right-handed alpha
Helix 166	AS4	E	23	40	Right-handed alpha
Helix 167	AS5	E	47	52	Right-handed alpha
Helix 168	AS6	E	53	55	Right-handed 310
Helix 169	AS7	E	58	69	Right-handed alpha
Helix 170	AS8	E	82	95	Right-handed alpha
Helix 171	AS9	E	96	108	Right-handed alpha
Helix 172	AT1	E	115	122	Right-handed alpha
Helix 173	AT2	E	137	145	Right-handed alpha
Helix 174	AT3	E	155	160	Right-handed alpha
Helix 175	AT4	E	186	190	Right-handed 310
Helix 176	AT5	E	192	197	Right-handed alpha
Helix 177	AT6	E	197	210	Right-handed alpha
Helix 178	AT7	E	222	235	Right-handed alpha
Helix 179	AT8	E	254	264	Right-handed alpha
Helix 180	AT9	E	282	298	Right-handed alpha
Helix 181	AU1	E	304	317	Right-handed alpha
Helix 182	AU2	E	318	321	Right-handed 310
Helix 183	AU3	E	328	334	Right-handed alpha
Helix 184	AU4	E	355	366	Right-handed alpha
Helix 185	AU5	E	366	372	Right-handed alpha
Helix 186	AU6	E	374	391	Right-handed alpha
Helix 187	AU7	E	417	426	Right-handed alpha
Helix 188	AU8	E	431	445	Right-handed alpha
Helix 189	AU9	E	447	461	Right-handed alpha
Helix 190	AV1	E	468	492	Right-handed alpha
Helix 191	AV2	E	510	519	Right-handed alpha
Helix 192	AV3	E	523	531	Right-handed 310
Helix 193	AV4	E	533	537	Right-handed 310
Helix 194	AV5	E	539	547	Right-handed 310
Helix 195	AV6	E	551	563	Right-handed alpha
Helix 196	AV7	E	579	598	Right-handed alpha
Helix 197	AV8	E	600	604	Right-handed 310
Helix 198	AV9	E	605	628	Right-handed alpha
Helix 199	AW1	E	648	659	Right-handed alpha
Helix 200	AW2	E	660	669	Right-handed alpha
Helix 201	AW3	E	672	676	Right-handed 310
Helix 202	AW4	E	680	699	Right-handed alpha
Helix 203	AW5	E	705	723	Right-handed alpha
Helix 204	AW6	E	729	742	Right-handed alpha
Helix 205	AW7	E	752	765	Right-handed alpha
Helix 206	AW8	E	768	785	Right-handed alpha
Helix 207	AW9	E	800	812	Right-handed alpha
Helix 208	AX1	E	818	826	Right-handed alpha
Helix 209	AX2	E	831	841	Right-handed alpha
Helix 210	AX3	E	846	856	Right-handed alpha
Helix 211	AX4	E	872	876	Right-handed 310
Helix 212	AX5	E	878	895	Right-handed alpha
Helix 213	AX6	E	913	922	Right-handed alpha
Helix 214	AX7	E	928	934	Right-handed 310
Helix 215	AX8	E	937	945	Right-handed alpha
Helix 216	AX9	E	963	971	Right-handed alpha
Helix 217	AY1	E	976	991	Right-handed alpha
Helix 218	AY2	E	994	1003	Right-handed alpha
Helix 219	AY3	F	95	106	Right-handed alpha

There are 13 sheets in PDB entry 8Y3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	129	131	parallel
Strand 4	A	43	46	parallel
Strand 5	A	213	215	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	346	347	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	129	131	parallel
Strand 4	B	43	46	parallel
Strand 5	B	213	215	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	346	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	87	88	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	115	116	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	129	131	parallel
Strand 4	D	43	46	parallel
Strand 5	D	213	215	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	575	first strand
Strand 2	F	15	17	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	129	131	parallel
Strand 4	E	43	46	parallel
Strand 5	E	213	215	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	346	347	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	87	88	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	115	116	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y3W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3W