Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y3Y entry

There are 6 chains in PDB entry 8Y3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	ILE 1005
B	LEU 6	ILE 1005
C	GLY 9	LEU 119
D	GLY 12	ILE 1005
E	LEU 6	ILE 1005
F	GLY 9	LEU 119

There are212 helices in PDB entry 8Y3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	22	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	47	53	Right-handed alpha
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	82	95	Right-handed alpha
Helix 6	AA6	A	95	109	Right-handed alpha
Helix 7	AA7	A	115	122	Right-handed alpha
Helix 8	AA8	A	136	145	Right-handed alpha
Helix 9	AA9	A	154	160	Right-handed alpha
Helix 10	AB1	A	186	192	Right-handed alpha
Helix 11	AB2	A	192	197	Right-handed alpha
Helix 12	AB3	A	199	210	Right-handed alpha
Helix 13	AB4	A	222	235	Right-handed alpha
Helix 14	AB5	A	254	265	Right-handed alpha
Helix 15	AB6	A	282	298	Right-handed alpha
Helix 16	AB7	A	304	317	Right-handed alpha
Helix 17	AB8	A	318	321	Right-handed 310
Helix 18	AB9	A	326	331	Right-handed alpha
Helix 19	AC1	A	355	366	Right-handed alpha
Helix 20	AC2	A	366	373	Right-handed alpha
Helix 21	AC3	A	374	391	Right-handed alpha
Helix 22	AC4	A	411	416	Right-handed alpha
Helix 23	AC5	A	417	426	Right-handed alpha
Helix 24	AC6	A	431	445	Right-handed alpha
Helix 25	AC7	A	447	462	Right-handed alpha
Helix 26	AC8	A	468	489	Right-handed alpha
Helix 27	AC9	A	508	519	Right-handed alpha
Helix 28	AD1	A	527	531	Right-handed 310
Helix 29	AD2	A	532	539	Right-handed alpha
Helix 30	AD3	A	552	563	Right-handed alpha
Helix 31	AD4	A	579	598	Right-handed alpha
Helix 32	AD5	A	600	604	Right-handed 310
Helix 33	AD6	A	605	628	Right-handed alpha
Helix 34	AD7	A	648	659	Right-handed alpha
Helix 35	AD8	A	660	670	Right-handed alpha
Helix 36	AD9	A	680	699	Right-handed alpha
Helix 37	AE1	A	705	722	Right-handed alpha
Helix 38	AE2	A	723	725	Right-handed 310
Helix 39	AE3	A	729	742	Right-handed alpha
Helix 40	AE4	A	752	764	Right-handed alpha
Helix 41	AE5	A	769	784	Right-handed alpha
Helix 42	AE6	A	800	812	Right-handed alpha
Helix 43	AE7	A	817	824	Right-handed alpha
Helix 44	AE8	A	831	841	Right-handed alpha
Helix 45	AE9	A	846	854	Right-handed alpha
Helix 46	AF1	A	878	895	Right-handed alpha
Helix 47	AF2	A	912	922	Right-handed alpha
Helix 48	AF3	A	929	933	Right-handed 310
Helix 49	AF4	A	937	945	Right-handed alpha
Helix 50	AF5	A	950	954	Right-handed 310
Helix 51	AF6	A	973	991	Right-handed alpha
Helix 52	AF7	A	994	1003	Right-handed alpha
Helix 53	AF8	B	10	22	Right-handed alpha
Helix 54	AF9	B	23	39	Right-handed alpha
Helix 55	AG1	B	47	53	Right-handed alpha
Helix 56	AG2	B	58	71	Right-handed alpha
Helix 57	AG3	B	82	95	Right-handed alpha
Helix 58	AG4	B	95	109	Right-handed alpha
Helix 59	AG5	B	115	122	Right-handed alpha
Helix 60	AG6	B	136	145	Right-handed alpha
Helix 61	AG7	B	154	160	Right-handed alpha
Helix 62	AG8	B	186	192	Right-handed alpha
Helix 63	AG9	B	192	197	Right-handed alpha
Helix 64	AH1	B	199	210	Right-handed alpha
Helix 65	AH2	B	222	235	Right-handed alpha
Helix 66	AH3	B	254	265	Right-handed alpha
Helix 67	AH4	B	282	298	Right-handed alpha
Helix 68	AH5	B	304	317	Right-handed alpha
Helix 69	AH6	B	318	321	Right-handed 310
Helix 70	AH7	B	326	331	Right-handed alpha
Helix 71	AH8	B	355	366	Right-handed alpha
Helix 72	AH9	B	366	373	Right-handed alpha
Helix 73	AI1	B	374	391	Right-handed alpha
Helix 74	AI2	B	411	416	Right-handed alpha
Helix 75	AI3	B	417	426	Right-handed alpha
Helix 76	AI4	B	431	445	Right-handed alpha
Helix 77	AI5	B	447	462	Right-handed alpha
Helix 78	AI6	B	468	493	Right-handed alpha
Helix 79	AI7	B	508	519	Right-handed alpha
Helix 80	AI8	B	527	531	Right-handed 310
Helix 81	AI9	B	532	539	Right-handed alpha
Helix 82	AJ1	B	552	563	Right-handed alpha
Helix 83	AJ2	B	579	598	Right-handed alpha
Helix 84	AJ3	B	600	604	Right-handed 310
Helix 85	AJ4	B	605	628	Right-handed alpha
Helix 86	AJ5	B	648	659	Right-handed alpha
Helix 87	AJ6	B	660	670	Right-handed alpha
Helix 88	AJ7	B	680	699	Right-handed alpha
Helix 89	AJ8	B	705	722	Right-handed alpha
Helix 90	AJ9	B	723	725	Right-handed 310
Helix 91	AK1	B	729	742	Right-handed alpha
Helix 92	AK2	B	752	764	Right-handed alpha
Helix 93	AK3	B	769	784	Right-handed alpha
Helix 94	AK4	B	800	812	Right-handed alpha
Helix 95	AK5	B	817	824	Right-handed alpha
Helix 96	AK6	B	831	841	Right-handed alpha
Helix 97	AK7	B	846	854	Right-handed alpha
Helix 98	AK8	B	878	895	Right-handed alpha
Helix 99	AK9	B	913	922	Right-handed alpha
Helix 100	AL1	B	929	933	Right-handed 310
Helix 101	AL2	B	937	945	Right-handed alpha
Helix 102	AL3	B	950	954	Right-handed 310
Helix 103	AL4	B	973	991	Right-handed alpha
Helix 104	AL5	B	994	1003	Right-handed alpha
Helix 105	AL6	C	10	14	Right-handed 310
Helix 106	AL7	C	95	106	Right-handed alpha
Helix 107	AL8	D	13	22	Right-handed alpha
Helix 108	AL9	D	23	39	Right-handed alpha
Helix 109	AM1	D	47	53	Right-handed alpha
Helix 110	AM2	D	58	71	Right-handed alpha
Helix 111	AM3	D	82	95	Right-handed alpha
Helix 112	AM4	D	95	109	Right-handed alpha
Helix 113	AM5	D	115	122	Right-handed alpha
Helix 114	AM6	D	136	145	Right-handed alpha
Helix 115	AM7	D	154	160	Right-handed alpha
Helix 116	AM8	D	186	192	Right-handed alpha
Helix 117	AM9	D	192	197	Right-handed alpha
Helix 118	AN1	D	199	210	Right-handed alpha
Helix 119	AN2	D	222	235	Right-handed alpha
Helix 120	AN3	D	254	265	Right-handed alpha
Helix 121	AN4	D	282	298	Right-handed alpha
Helix 122	AN5	D	304	317	Right-handed alpha
Helix 123	AN6	D	318	321	Right-handed 310
Helix 124	AN7	D	326	331	Right-handed alpha
Helix 125	AN8	D	355	366	Right-handed alpha
Helix 126	AN9	D	366	373	Right-handed alpha
Helix 127	AO1	D	374	391	Right-handed alpha
Helix 128	AO2	D	411	416	Right-handed alpha
Helix 129	AO3	D	417	426	Right-handed alpha
Helix 130	AO4	D	431	445	Right-handed alpha
Helix 131	AO5	D	447	462	Right-handed alpha
Helix 132	AO6	D	468	489	Right-handed alpha
Helix 133	AO7	D	508	519	Right-handed alpha
Helix 134	AO8	D	527	531	Right-handed 310
Helix 135	AO9	D	532	539	Right-handed alpha
Helix 136	AP1	D	552	563	Right-handed alpha
Helix 137	AP2	D	579	598	Right-handed alpha
Helix 138	AP3	D	600	604	Right-handed 310
Helix 139	AP4	D	605	628	Right-handed alpha
Helix 140	AP5	D	648	659	Right-handed alpha
Helix 141	AP6	D	660	670	Right-handed alpha
Helix 142	AP7	D	680	699	Right-handed alpha
Helix 143	AP8	D	705	722	Right-handed alpha
Helix 144	AP9	D	723	725	Right-handed 310
Helix 145	AQ1	D	729	742	Right-handed alpha
Helix 146	AQ2	D	752	764	Right-handed alpha
Helix 147	AQ3	D	769	784	Right-handed alpha
Helix 148	AQ4	D	800	812	Right-handed alpha
Helix 149	AQ5	D	817	824	Right-handed alpha
Helix 150	AQ6	D	831	841	Right-handed alpha
Helix 151	AQ7	D	846	854	Right-handed alpha
Helix 152	AQ8	D	878	895	Right-handed alpha
Helix 153	AQ9	D	912	922	Right-handed alpha
Helix 154	AR1	D	929	933	Right-handed 310
Helix 155	AR2	D	937	945	Right-handed alpha
Helix 156	AR3	D	950	954	Right-handed 310
Helix 157	AR4	D	973	991	Right-handed alpha
Helix 158	AR5	D	994	1003	Right-handed alpha
Helix 159	AR6	E	7	22	Right-handed alpha
Helix 160	AR7	E	23	39	Right-handed alpha
Helix 161	AR8	E	47	53	Right-handed alpha
Helix 162	AR9	E	58	71	Right-handed alpha
Helix 163	AS1	E	82	95	Right-handed alpha
Helix 164	AS2	E	95	109	Right-handed alpha
Helix 165	AS3	E	115	122	Right-handed alpha
Helix 166	AS4	E	136	145	Right-handed alpha
Helix 167	AS5	E	154	160	Right-handed alpha
Helix 168	AS6	E	186	192	Right-handed alpha
Helix 169	AS7	E	192	197	Right-handed alpha
Helix 170	AS8	E	199	210	Right-handed alpha
Helix 171	AS9	E	222	235	Right-handed alpha
Helix 172	AT1	E	254	265	Right-handed alpha
Helix 173	AT2	E	282	298	Right-handed alpha
Helix 174	AT3	E	304	317	Right-handed alpha
Helix 175	AT4	E	318	321	Right-handed 310
Helix 176	AT5	E	326	331	Right-handed alpha
Helix 177	AT6	E	355	366	Right-handed alpha
Helix 178	AT7	E	366	373	Right-handed alpha
Helix 179	AT8	E	374	391	Right-handed alpha
Helix 180	AT9	E	411	416	Right-handed alpha
Helix 181	AU1	E	417	426	Right-handed alpha
Helix 182	AU2	E	431	445	Right-handed alpha
Helix 183	AU3	E	447	462	Right-handed alpha
Helix 184	AU4	E	468	492	Right-handed alpha
Helix 185	AU5	E	508	519	Right-handed alpha
Helix 186	AU6	E	527	531	Right-handed 310
Helix 187	AU7	E	532	539	Right-handed alpha
Helix 188	AU8	E	552	563	Right-handed alpha
Helix 189	AU9	E	579	598	Right-handed alpha
Helix 190	AV1	E	600	604	Right-handed 310
Helix 191	AV2	E	605	628	Right-handed alpha
Helix 192	AV3	E	648	659	Right-handed alpha
Helix 193	AV4	E	660	670	Right-handed alpha
Helix 194	AV5	E	680	699	Right-handed alpha
Helix 195	AV6	E	705	722	Right-handed alpha
Helix 196	AV7	E	723	725	Right-handed 310
Helix 197	AV8	E	729	742	Right-handed alpha
Helix 198	AV9	E	752	764	Right-handed alpha
Helix 199	AW1	E	769	784	Right-handed alpha
Helix 200	AW2	E	800	812	Right-handed alpha
Helix 201	AW3	E	817	824	Right-handed alpha
Helix 202	AW4	E	831	841	Right-handed alpha
Helix 203	AW5	E	846	854	Right-handed alpha
Helix 204	AW6	E	878	895	Right-handed alpha
Helix 205	AW7	E	913	922	Right-handed alpha
Helix 206	AW8	E	929	933	Right-handed 310
Helix 207	AW9	E	937	945	Right-handed alpha
Helix 208	AX1	E	950	954	Right-handed 310
Helix 209	AX2	E	973	991	Right-handed alpha
Helix 210	AX3	E	994	1003	Right-handed alpha
Helix 211	AX4	F	10	14	Right-handed 310
Helix 212	AX5	F	95	106	Right-handed alpha

There are 12 sheets in PDB entry 8Y3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	129	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	129	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	85	88	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	115	116	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	129	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	395	396	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	129	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	345	348	anti-parallel
Strand 3	E	395	396	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	85	88	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	115	116	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y3Y