Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y41 entry

There are 2 chains in PDB entry 8Y41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21PRO 290
D
 PRO 17PRO 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8Y41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
91 97Right-handed alpha
Helix 6
AA6
A
105 131Right-handed alpha
Helix 7
AA7
A
131 152Right-handed alpha
Helix 8
AA8
A
154 160Right-handed alpha
Helix 9
AA9
A
164 172Right-handed alpha
Helix 10
AB1
A
179 205Right-handed alpha
Helix 11
AB2
A
210 219Right-handed alpha
Helix 12
AB3
A
219 231Right-handed alpha
Helix 13
AB4
A
235 254Right-handed alpha
Helix 14
AB5
A
258 283Right-handed alpha
Helix 15
AB6
D
20 30Right-handed alpha
Helix 16
AB7
D
42 51Right-handed alpha
Helix 17
AB8
D
53 68Right-handed alpha
Helix 18
AB9
D
103 129Right-handed alpha
Helix 19
AC1
D
131 149Right-handed alpha
Helix 20
AC2
D
152 159Right-handed alpha
Helix 21
AC3
D
162 170Right-handed alpha
Helix 22
AC4
D
177 203Right-handed alpha
Helix 23
AC5
D
208 217Right-handed alpha
Helix 24
AC6
D
217 229Right-handed alpha
Helix 25
AC7
D
231 252Right-handed alpha
Helix 26
AC8
D
256 281Right-handed alpha
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There are 2 sheets in PDB entry 8Y41. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
81 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 71first strand
Strand 2
D
79 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il