Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y47 entry

There are 2 chains in PDB entry 8Y47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 278ARG 489
B
 ASP 366PHE 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8Y47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
304 308Right-handed 310
Helix 2
AA2
A
336 340Right-handed 310
Helix 3
AA3
A
368 378Right-handed alpha
Helix 4
AA4
A
440 442Right-handed 310
Helix 5
AA5
A
461 479Right-handed alpha
Helix 6
AA6
B
367 371Right-handed alpha
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There are 3 sheets in PDB entry 8Y47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
332 333anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
309 315anti-parallel
Strand 3
A
344 350anti-parallel
Strand 4
A
353 358anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 424first strand
Strand 2
A
410 415anti-parallel
Strand 3
A
402 406anti-parallel
Strand 4
A
383 390anti-parallel
Strand 5
A
453 459anti-parallel
Strand 6
A
444 450anti-parallel
Strand 7
A
430 433anti-parallel
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