Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y48 entry

There are 3 chains in PDB entry 8Y48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 53	SER 653
B	GLU 53	SER 653
C	GLU 53	SER 653

There are 21 helices in PDB entry 8Y48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	154	Right-handed alpha
Helix 2	AA2	A	362	365	Right-handed 310
Helix 3	AA3	A	366	379	Right-handed alpha
Helix 4	AA4	A	456	498	Right-handed alpha
Helix 5	AA5	A	501	510	Right-handed alpha
Helix 6	AA6	A	616	618	Right-handed 310
Helix 7	AA7	A	644	652	Right-handed alpha
Helix 8	AA8	B	149	154	Right-handed alpha
Helix 9	AA9	B	362	365	Right-handed 310
Helix 10	AB1	B	366	379	Right-handed alpha
Helix 11	AB2	B	456	498	Right-handed alpha
Helix 12	AB3	B	501	510	Right-handed alpha
Helix 13	AB4	B	616	618	Right-handed 310
Helix 14	AB5	B	644	652	Right-handed alpha
Helix 15	AB6	C	149	154	Right-handed alpha
Helix 16	AB7	C	362	365	Right-handed 310
Helix 17	AB8	C	366	379	Right-handed alpha
Helix 18	AB9	C	456	498	Right-handed alpha
Helix 19	AC1	C	501	510	Right-handed alpha
Helix 20	AC2	C	616	618	Right-handed 310
Helix 21	AC3	C	644	652	Right-handed alpha

There are 24 sheets in PDB entry 8Y48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	519	first strand
Strand 2	A	522	526	anti-parallel
Strand 3	A	75	79	anti-parallel
Strand 4	B	619	621	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	323	first strand
Strand 2	A	94	102	anti-parallel
Strand 3	A	398	406	anti-parallel
Strand 4	A	382	384	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	349	first strand
Strand 2	A	334	339	anti-parallel
Strand 3	A	327	328	anti-parallel
Strand 4	A	94	102	anti-parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	389	392	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	108	121	anti-parallel
Strand 3	A	218	231	anti-parallel
Strand 4	A	238	240	anti-parallel
Strand 5	A	245	246	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	197	199	anti-parallel
Strand 3	A	218	231	anti-parallel
Strand 4	A	108	121	anti-parallel
Strand 5	A	302	306	anti-parallel
Strand 6	A	293	297	anti-parallel
Strand 7	A	271	273	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	181	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	538	first strand
Strand 2	A	555	558	anti-parallel
Strand 3	A	567	571	anti-parallel
Strand 4	A	577	578	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	597	first strand
Strand 2	A	600	604	anti-parallel
Strand 3	A	613	614	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	621	first strand
Strand 2	C	75	79	parallel
Strand 3	C	522	526	anti-parallel
Strand 4	C	515	519	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	519	first strand
Strand 2	B	522	526	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	C	619	621	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	323	first strand
Strand 2	B	94	102	anti-parallel
Strand 3	B	398	406	anti-parallel
Strand 4	B	382	384	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	349	first strand
Strand 2	B	334	339	anti-parallel
Strand 3	B	327	328	anti-parallel
Strand 4	B	94	102	anti-parallel
Strand 5	B	398	406	anti-parallel
Strand 6	B	389	392	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	108	121	anti-parallel
Strand 3	B	218	231	anti-parallel
Strand 4	B	238	240	anti-parallel
Strand 5	B	245	246	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	197	199	anti-parallel
Strand 3	B	218	231	anti-parallel
Strand 4	B	108	121	anti-parallel
Strand 5	B	302	306	anti-parallel
Strand 6	B	293	297	anti-parallel
Strand 7	B	271	273	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	181	183	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	538	first strand
Strand 2	B	555	558	anti-parallel
Strand 3	B	567	571	anti-parallel
Strand 4	B	577	578	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	597	first strand
Strand 2	B	600	604	anti-parallel
Strand 3	B	613	614	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	323	first strand
Strand 2	C	94	102	anti-parallel
Strand 3	C	398	406	anti-parallel
Strand 4	C	382	384	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	349	first strand
Strand 2	C	334	339	anti-parallel
Strand 3	C	327	328	anti-parallel
Strand 4	C	94	102	anti-parallel
Strand 5	C	398	406	anti-parallel
Strand 6	C	389	392	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	108	121	anti-parallel
Strand 3	C	218	231	anti-parallel
Strand 4	C	238	240	anti-parallel
Strand 5	C	245	246	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	197	199	anti-parallel
Strand 3	C	218	231	anti-parallel
Strand 4	C	108	121	anti-parallel
Strand 5	C	302	306	anti-parallel
Strand 6	C	293	297	anti-parallel
Strand 7	C	271	273	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	181	183	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	538	first strand
Strand 2	C	555	558	anti-parallel
Strand 3	C	567	571	anti-parallel
Strand 4	C	577	578	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	597	first strand
Strand 2	C	600	604	anti-parallel
Strand 3	C	613	614	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y48

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y48