Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y4V entry

There are 3 chains in PDB entry 8Y4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 23GLU 294
B
 ARG 23GLU 294
C
 ARG 23GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8Y4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 54Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
A
108 112Right-handed alpha
Helix 6
AA6
A
114 122Right-handed alpha
Helix 7
AA7
A
133 148Right-handed alpha
Helix 8
AA8
A
150 172Right-handed alpha
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
222 230Right-handed alpha
Helix 11
AB2
A
243 249Right-handed alpha
Helix 12
AB3
A
250 256Right-handed 310
Helix 13
AB4
A
257 262Right-handed alpha
Helix 14
AB5
A
269 276Right-handed alpha
Helix 15
AB6
A
278 294Right-handed alpha
Helix 16
AB7
B
45 54Right-handed alpha
Helix 17
AB8
B
67 71Right-handed 310
Helix 18
AB9
B
72 77Right-handed alpha
Helix 19
AC1
B
92 99Right-handed alpha
Helix 20
AC2
B
114 122Right-handed alpha
Helix 21
AC3
B
133 148Right-handed alpha
Helix 22
AC4
B
150 172Right-handed alpha
Helix 23
AC5
B
195 204Right-handed alpha
Helix 24
AC6
B
222 230Right-handed alpha
Helix 25
AC7
B
243 249Right-handed alpha
Helix 26
AC8
B
250 256Right-handed 310
Helix 27
AC9
B
257 262Right-handed alpha
Helix 28
AD1
B
269 275Right-handed alpha
Helix 29
AD2
B
278 294Right-handed alpha
Helix 30
AD3
C
45 55Right-handed alpha
Helix 31
AD4
C
67 71Right-handed 310
Helix 32
AD5
C
72 77Right-handed alpha
Helix 33
AD6
C
92 99Right-handed alpha
Helix 34
AD7
C
114 122Right-handed alpha
Helix 35
AD8
C
133 148Right-handed alpha
Helix 36
AD9
C
150 172Right-handed alpha
Helix 37
AE1
C
195 204Right-handed alpha
Helix 38
AE2
C
222 230Right-handed alpha
Helix 39
AE3
C
243 251Right-handed alpha
Helix 40
AE4
C
252 256Right-handed 310
Helix 41
AE5
C
257 262Right-handed alpha
Helix 42
AE6
C
269 275Right-handed alpha
Helix 43
AE7
C
278 293Right-handed alpha
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There are 9 sheets in PDB entry 8Y4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
32 33anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
61 62parallel
Strand 3
A
41 43parallel
Strand 4
A
103 107parallel
Strand 5
A
124 127parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
233 238parallel
Strand 5
A
265 267parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
30 33anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
61 62parallel
Strand 3
B
41 43parallel
Strand 4
B
103 107parallel
Strand 5
B
124 127parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
178 184anti-parallel
Strand 4
B
233 238parallel
Strand 5
B
265 267parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
31 33anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
C
61 62parallel
Strand 3
C
41 43parallel
Strand 4
C
103 107parallel
Strand 5
C
124 127parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
187 191anti-parallel
Strand 3
C
178 184anti-parallel
Strand 4
C
233 238parallel
Strand 5
C
265 267parallel
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