Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y4W entry

There are 2 chains in PDB entry 8Y4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 612
B
 VAL 2SER 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8Y4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 32Right-handed alpha
Helix 2
AA2
A
39 63Right-handed alpha
Helix 3
AA3
A
79 109Right-handed alpha
Helix 4
AA4
A
126 149Right-handed alpha
Helix 5
AA5
A
157 173Right-handed alpha
Helix 6
AA6
A
174 185Right-handed 310
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
209 225Right-handed alpha
Helix 9
AA9
A
226 228Right-handed 310
Helix 10
AB1
A
229 234Right-handed alpha
Helix 11
AB2
A
235 240Right-handed alpha
Helix 12
AB3
A
247 258Right-handed alpha
Helix 13
AB4
A
263 276Right-handed alpha
Helix 14
AB5
A
281 295Right-handed alpha
Helix 15
AB6
A
300 318Right-handed alpha
Helix 16
AB7
A
322 333Right-handed alpha
Helix 17
AB8
A
334 337Right-handed 310
Helix 18
AB9
A
343 354Right-handed alpha
Helix 19
AC1
A
356 387Right-handed alpha
Helix 20
AC2
A
397 406Right-handed alpha
Helix 21
AC3
A
410 421Right-handed alpha
Helix 22
AC4
A
426 445Right-handed alpha
Helix 23
AC5
A
450 485Right-handed alpha
Helix 24
AC6
A
486 499Right-handed alpha
Helix 25
AC7
A
501 520Right-handed alpha
Helix 26
AC8
A
522 527Right-handed alpha
Helix 27
AC9
A
529 540Right-handed alpha
Helix 28
AD1
A
543 559Right-handed alpha
Helix 29
AD2
A
565 576Right-handed alpha
Helix 30
AD3
A
578 586Right-handed alpha
Helix 31
AD4
A
586 602Right-handed alpha
Helix 32
AD5
A
603 608Right-handed alpha
Helix 33
AD6
B
105 109Right-handed 310
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There are 4 sheets in PDB entry 8Y4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
119 120anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 72anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
116 120parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
116 120parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
111 112anti-parallel
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