Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y4X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y4X entry

There are 2 chains in PDB entry 8Y4X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 612
B
 VAL 2SER 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8Y4X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 32Right-handed alpha
Helix 2
AA2
A
39 63Right-handed alpha
Helix 3
AA3
A
71 75Right-handed 310
Helix 4
AA4
A
76 109Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
126 149Right-handed alpha
Helix 7
AA7
A
157 173Right-handed alpha
Helix 8
AA8
A
174 180Right-handed 310
Helix 9
AA9
A
181 185Right-handed 310
Helix 10
AB1
A
192 206Right-handed alpha
Helix 11
AB2
A
209 225Right-handed alpha
Helix 12
AB3
A
226 228Right-handed 310
Helix 13
AB4
A
229 234Right-handed alpha
Helix 14
AB5
A
235 240Right-handed alpha
Helix 15
AB6
A
247 255Right-handed alpha
Helix 16
AB7
A
264 276Right-handed alpha
Helix 17
AB8
A
281 295Right-handed alpha
Helix 18
AB9
A
300 319Right-handed alpha
Helix 19
AC1
A
322 333Right-handed alpha
Helix 20
AC2
A
334 337Right-handed 310
Helix 21
AC3
A
343 354Right-handed alpha
Helix 22
AC4
A
356 387Right-handed alpha
Helix 23
AC5
A
397 406Right-handed alpha
Helix 24
AC6
A
410 422Right-handed alpha
Helix 25
AC7
A
426 445Right-handed alpha
Helix 26
AC8
A
451 485Right-handed alpha
Helix 27
AC9
A
486 499Right-handed alpha
Helix 28
AD1
A
501 520Right-handed alpha
Helix 29
AD2
A
521 529Right-handed alpha
Helix 30
AD3
A
529 540Right-handed alpha
Helix 31
AD4
A
543 559Right-handed alpha
Helix 32
AD5
A
565 576Right-handed alpha
Helix 33
AD6
A
578 586Right-handed alpha
Helix 34
AD7
A
589 602Right-handed alpha
Helix 35
AD8
B
62 65Right-handed 310
Helix 36
AD9
B
87 91Right-handed 310
Helix 37
AE1
B
105 109Right-handed 310
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There are 3 sheets in PDB entry 8Y4X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
116 120parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
116 120parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
111 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il