Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y54 entry

There are 2 chains in PDB entry 8Y54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ASN 390
B
 GLU 3ASN 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8Y54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
63 79Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
92 105Right-handed alpha
Helix 5
AA5
A
118 128Right-handed alpha
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
177 191Right-handed alpha
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
213 217Right-handed 310
Helix 10
AB1
A
220 223Right-handed 310
Helix 11
AB2
A
230 236Right-handed alpha
Helix 12
AB3
A
249 264Right-handed alpha
Helix 13
AB4
A
271 283Right-handed alpha
Helix 14
AB5
A
283 309Right-handed alpha
Helix 15
AB6
A
328 331Right-handed 310
Helix 16
AB7
A
333 346Right-handed alpha
Helix 17
AB8
A
353 356Right-handed 310
Helix 18
AB9
A
358 360Right-handed 310
Helix 19
AC1
A
370 389Right-handed alpha
Helix 20
AC2
B
41 53Right-handed alpha
Helix 21
AC3
B
63 79Right-handed alpha
Helix 22
AC4
B
83 85Right-handed 310
Helix 23
AC5
B
92 105Right-handed alpha
Helix 24
AC6
B
118 128Right-handed alpha
Helix 25
AC7
B
147 156Right-handed alpha
Helix 26
AC8
B
177 191Right-handed alpha
Helix 27
AC9
B
201 205Right-handed 310
Helix 28
AD1
B
213 217Right-handed 310
Helix 29
AD2
B
218 219Right-handed 310
Helix 30
AD3
B
221 223Right-handed 310
Helix 31
AD4
B
231 236Right-handed alpha
Helix 32
AD5
B
237 241Right-handed 310
Helix 33
AD6
B
249 264Right-handed alpha
Helix 34
AD7
B
271 283Right-handed alpha
Helix 35
AD8
B
283 309Right-handed alpha
Helix 36
AD9
B
328 331Right-handed 310
Helix 37
AE1
B
333 346Right-handed alpha
Helix 38
AE2
B
353 356Right-handed 310
Helix 39
AE3
B
358 360Right-handed 310
Helix 40
AE4
B
370 389Right-handed alpha
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There are 7 sheets in PDB entry 8Y54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
347 348parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
194 198parallel
Strand 5
A
160 166parallel
Strand 6
A
110 113parallel
Strand 7
A
131 134parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
362 366anti-parallel
Strand 4
A
350 351anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
347 348parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
194 198parallel
Strand 5
B
160 166parallel
Strand 6
B
110 113parallel
Strand 7
B
131 134parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
143 145anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
362 366anti-parallel
Strand 4
B
350 351anti-parallel
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