Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y5H entry

There are 5 chains in PDB entry 8Y5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 15	ASP 374
B	PHE 7	ASN 279
C	LEU 5	ARG 253
D	PRO 16	ALA 373
E	ASN 26	GLY 347

There are 63 helices in PDB entry 8Y5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	65	Right-handed alpha
Helix 2	AA2	A	105	116	Right-handed alpha
Helix 3	AA3	A	120	122	Right-handed 310
Helix 4	AA4	A	123	134	Right-handed alpha
Helix 5	AA5	A	149	163	Right-handed alpha
Helix 6	AA6	A	179	198	Right-handed alpha
Helix 7	AA7	A	207	215	Right-handed alpha
Helix 8	AA8	A	231	238	Right-handed alpha
Helix 9	AA9	A	241	248	Right-handed alpha
Helix 10	AB1	B	9	23	Right-handed alpha
Helix 11	AB2	B	23	34	Right-handed alpha
Helix 12	AB3	B	50	57	Right-handed alpha
Helix 13	AB4	B	58	91	Right-handed alpha
Helix 14	AB5	B	97	104	Right-handed alpha
Helix 15	AB6	B	105	111	Right-handed 310
Helix 16	AB7	B	112	124	Right-handed alpha
Helix 17	AB8	B	132	137	Right-handed alpha
Helix 18	AB9	B	149	162	Right-handed alpha
Helix 19	AC1	B	162	175	Right-handed alpha
Helix 20	AC2	B	177	188	Right-handed alpha
Helix 21	AC3	B	190	198	Right-handed alpha
Helix 22	AC4	B	198	203	Right-handed alpha
Helix 23	AC5	B	203	216	Right-handed alpha
Helix 24	AC6	B	217	220	Right-handed 310
Helix 25	AC7	B	221	229	Right-handed alpha
Helix 26	AC8	B	235	246	Right-handed alpha
Helix 27	AC9	B	249	277	Right-handed alpha
Helix 28	AD1	C	6	28	Right-handed alpha
Helix 29	AD2	C	44	53	Right-handed alpha
Helix 30	AD3	C	53	88	Right-handed alpha
Helix 31	AD4	C	92	105	Right-handed alpha
Helix 32	AD5	C	107	123	Right-handed alpha
Helix 33	AD6	C	127	152	Right-handed alpha
Helix 34	AD7	C	153	155	Right-handed 310
Helix 35	AD8	C	156	165	Right-handed alpha
Helix 36	AD9	C	170	176	Right-handed alpha
Helix 37	AE1	C	176	198	Right-handed alpha
Helix 38	AE2	C	200	207	Right-handed alpha
Helix 39	AE3	C	213	225	Right-handed alpha
Helix 40	AE4	C	228	253	Right-handed alpha
Helix 41	AE5	D	55	65	Right-handed alpha
Helix 42	AE6	D	105	117	Right-handed alpha
Helix 43	AE7	D	123	135	Right-handed alpha
Helix 44	AE8	D	149	163	Right-handed alpha
Helix 45	AE9	D	181	198	Right-handed alpha
Helix 46	AF1	D	207	215	Right-handed alpha
Helix 47	AF2	D	231	238	Right-handed alpha
Helix 48	AF3	D	295	297	Right-handed 310
Helix 49	AF4	E	41	51	Right-handed alpha
Helix 50	AF5	E	61	72	Right-handed alpha
Helix 51	AF6	E	83	93	Right-handed alpha
Helix 52	AF7	E	106	110	Right-handed 310
Helix 53	AF8	E	150	156	Right-handed 310
Helix 54	AF9	E	168	174	Right-handed alpha
Helix 55	AG1	E	176	181	Right-handed alpha
Helix 56	AG2	E	191	200	Right-handed alpha
Helix 57	AG3	E	201	206	Right-handed 310
Helix 58	AG4	E	215	220	Right-handed alpha
Helix 59	AG5	E	230	238	Right-handed alpha
Helix 60	AG6	E	267	279	Right-handed alpha
Helix 61	AG7	E	280	292	Right-handed alpha
Helix 62	AG8	E	297	303	Right-handed alpha
Helix 63	AG9	E	333	346	Right-handed alpha

There are 15 sheets in PDB entry 8Y5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	41	first strand
Strand 2	A	16	27	anti-parallel
Strand 3	A	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	168	172	parallel
Strand 3	A	200	205	parallel
Strand 4	A	45	49	parallel
Strand 5	A	217	222	parallel
Strand 6	A	225	230	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	266	271	anti-parallel
Strand 3	A	252	263	anti-parallel
Strand 4	A	289	294	anti-parallel
Strand 5	A	370	373	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	303	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	326	333	anti-parallel
Strand 5	A	321	322	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	303	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	326	333	anti-parallel
Strand 5	A	338	344	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	18	27	anti-parallel
Strand 3	D	39	40	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	18	27	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	79	80	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	168	172	parallel
Strand 3	D	200	205	parallel
Strand 4	D	45	49	parallel
Strand 5	D	217	222	parallel
Strand 6	D	225	230	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	279	first strand
Strand 2	D	266	271	anti-parallel
Strand 3	D	252	261	anti-parallel
Strand 4	D	289	294	anti-parallel
Strand 5	D	370	372	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	301	first strand
Strand 2	D	362	364	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	322	first strand
Strand 2	D	326	330	anti-parallel
Strand 3	D	341	344	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	33	first strand
Strand 2	E	53	58	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	229	first strand
Strand 2	E	127	139	anti-parallel
Strand 3	E	243	246	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	229	first strand
Strand 2	E	127	139	anti-parallel
Strand 3	E	253	259	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	165	first strand
Strand 2	E	208	209	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5H