Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y5I entry

There are 5 chains in PDB entry 8Y5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	ALA 373
B	THR 5	LEU 269
C	GLY 3	ARG 253
D	PRO 16	ALA 373
E	ASN 27	GLY 347

There are 68 helices in PDB entry 8Y5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	64	Right-handed alpha
Helix 2	AA2	A	105	117	Right-handed alpha
Helix 3	AA3	A	123	135	Right-handed alpha
Helix 4	AA4	A	137	141	Right-handed 310
Helix 5	AA5	A	144	148	Right-handed 310
Helix 6	AA6	A	149	163	Right-handed alpha
Helix 7	AA7	A	179	197	Right-handed alpha
Helix 8	AA8	A	207	215	Right-handed alpha
Helix 9	AA9	A	233	238	Right-handed alpha
Helix 10	AB1	A	295	297	Right-handed 310
Helix 11	AB2	B	6	23	Right-handed alpha
Helix 12	AB3	B	23	35	Right-handed alpha
Helix 13	AB4	B	50	55	Right-handed alpha
Helix 14	AB5	B	58	91	Right-handed alpha
Helix 15	AB6	B	97	107	Right-handed alpha
Helix 16	AB7	B	108	111	Right-handed 310
Helix 17	AB8	B	112	125	Right-handed alpha
Helix 18	AB9	B	128	137	Right-handed alpha
Helix 19	AC1	B	149	161	Right-handed alpha
Helix 20	AC2	B	162	175	Right-handed alpha
Helix 21	AC3	B	177	187	Right-handed alpha
Helix 22	AC4	B	190	198	Right-handed alpha
Helix 23	AC5	B	198	216	Right-handed alpha
Helix 24	AC6	B	217	221	Right-handed 310
Helix 25	AC7	B	222	230	Right-handed alpha
Helix 26	AC8	B	235	246	Right-handed alpha
Helix 27	AC9	B	249	268	Right-handed alpha
Helix 28	AD1	C	4	29	Right-handed alpha
Helix 29	AD2	C	44	54	Right-handed alpha
Helix 30	AD3	C	56	87	Right-handed alpha
Helix 31	AD4	C	93	105	Right-handed alpha
Helix 32	AD5	C	109	123	Right-handed alpha
Helix 33	AD6	C	127	138	Right-handed alpha
Helix 34	AD7	C	139	152	Right-handed alpha
Helix 35	AD8	C	155	166	Right-handed alpha
Helix 36	AD9	C	168	181	Right-handed alpha
Helix 37	AE1	C	181	196	Right-handed alpha
Helix 38	AE2	C	201	207	Right-handed alpha
Helix 39	AE3	C	213	221	Right-handed alpha
Helix 40	AE4	C	228	252	Right-handed alpha
Helix 41	AE5	D	55	64	Right-handed alpha
Helix 42	AE6	D	105	117	Right-handed alpha
Helix 43	AE7	D	123	135	Right-handed alpha
Helix 44	AE8	D	144	148	Right-handed 310
Helix 45	AE9	D	149	163	Right-handed alpha
Helix 46	AF1	D	179	198	Right-handed alpha
Helix 47	AF2	D	207	215	Right-handed alpha
Helix 48	AF3	D	233	238	Right-handed alpha
Helix 49	AF4	D	241	246	Right-handed alpha
Helix 50	AF5	D	295	299	Right-handed 310
Helix 51	AF6	E	41	50	Right-handed alpha
Helix 52	AF7	E	61	72	Right-handed alpha
Helix 53	AF8	E	83	88	Right-handed alpha
Helix 54	AF9	E	100	104	Right-handed 310
Helix 55	AG1	E	111	116	Right-handed alpha
Helix 56	AG2	E	144	148	Right-handed 310
Helix 57	AG3	E	151	156	Right-handed 310
Helix 58	AG4	E	168	181	Right-handed alpha
Helix 59	AG5	E	188	201	Right-handed alpha
Helix 60	AG6	E	202	204	Right-handed 310
Helix 61	AG7	E	215	220	Right-handed alpha
Helix 62	AG8	E	230	238	Right-handed alpha
Helix 63	AG9	E	267	279	Right-handed alpha
Helix 64	AH1	E	280	291	Right-handed alpha
Helix 65	AH2	E	297	302	Right-handed alpha
Helix 66	AH3	E	305	310	Right-handed alpha
Helix 67	AH4	E	317	323	Right-handed alpha
Helix 68	AH5	E	333	346	Right-handed alpha

There are 14 sheets in PDB entry 8Y5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	18	27	anti-parallel
Strand 3	A	38	40	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	18	27	anti-parallel
Strand 3	A	71	76	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	168	172	parallel
Strand 3	A	200	204	parallel
Strand 4	A	45	49	parallel
Strand 5	A	218	222	parallel
Strand 6	A	225	230	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	278	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	252	261	anti-parallel
Strand 4	A	289	294	anti-parallel
Strand 5	A	370	372	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	303	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	329	333	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	18	27	anti-parallel
Strand 3	D	37	40	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	18	27	anti-parallel
Strand 3	D	71	76	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	168	172	parallel
Strand 3	D	200	204	parallel
Strand 4	D	45	49	parallel
Strand 5	D	217	222	parallel
Strand 6	D	225	230	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	278	first strand
Strand 2	D	267	271	anti-parallel
Strand 3	D	252	261	anti-parallel
Strand 4	D	289	294	anti-parallel
Strand 5	D	370	372	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	303	first strand
Strand 2	D	360	363	anti-parallel
Strand 3	D	313	321	anti-parallel
Strand 4	D	328	333	anti-parallel
Strand 5	D	338	341	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	58	first strand
Strand 2	E	28	33	parallel
Strand 3	E	79	80	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	229	first strand
Strand 2	E	127	139	anti-parallel
Strand 3	E	243	246	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	229	first strand
Strand 2	E	127	139	anti-parallel
Strand 3	E	253	259	anti-parallel
Strand 4	E	325	326	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	166	first strand
Strand 2	E	206	210	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5I