Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y5J entry

There are 3 chains in PDB entry 8Y5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	PRO 1139
B	GLN 26	PRO 1139
C	GLN 26	PRO 1139

There are 65 helices in PDB entry 8Y5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	295	304	Right-handed alpha
Helix 2	AA2	A	338	343	Right-handed alpha
Helix 3	AA3	A	366	371	Right-handed alpha
Helix 4	AA4	A	406	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	615	625	Right-handed alpha
Helix 8	AA8	A	736	742	Right-handed alpha
Helix 9	AA9	A	745	753	Right-handed alpha
Helix 10	AB1	A	757	782	Right-handed alpha
Helix 11	AB2	A	810	814	Right-handed 310
Helix 12	AB3	A	815	825	Right-handed alpha
Helix 13	AB4	A	865	884	Right-handed alpha
Helix 14	AB5	A	885	889	Right-handed 310
Helix 15	AB6	A	896	907	Right-handed alpha
Helix 16	AB7	A	912	918	Right-handed alpha
Helix 17	AB8	A	918	940	Right-handed alpha
Helix 18	AB9	A	944	964	Right-handed alpha
Helix 19	AC1	A	965	967	Right-handed 310
Helix 20	AC2	A	975	981	Right-handed alpha
Helix 21	AC3	A	984	1032	Right-handed alpha
Helix 22	AC4	B	295	304	Right-handed alpha
Helix 23	AC5	B	338	343	Right-handed alpha
Helix 24	AC6	B	366	371	Right-handed 310
Helix 25	AC7	B	406	410	Right-handed 310
Helix 26	AC8	B	416	422	Right-handed alpha
Helix 27	AC9	B	438	443	Right-handed alpha
Helix 28	AD1	B	615	625	Right-handed alpha
Helix 29	AD2	B	736	742	Right-handed alpha
Helix 30	AD3	B	745	754	Right-handed alpha
Helix 31	AD4	B	757	782	Right-handed alpha
Helix 32	AD5	B	810	814	Right-handed 310
Helix 33	AD6	B	815	825	Right-handed alpha
Helix 34	AD7	B	865	884	Right-handed alpha
Helix 35	AD8	B	885	889	Right-handed 310
Helix 36	AD9	B	896	907	Right-handed alpha
Helix 37	AE1	B	912	918	Right-handed alpha
Helix 38	AE2	B	918	940	Right-handed alpha
Helix 39	AE3	B	944	964	Right-handed alpha
Helix 40	AE4	B	965	967	Right-handed 310
Helix 41	AE5	B	975	981	Right-handed alpha
Helix 42	AE6	B	984	1032	Right-handed alpha
Helix 43	AE7	B	1115	1117	Right-handed 310
Helix 44	AE8	C	295	304	Right-handed alpha
Helix 45	AE9	C	337	343	Right-handed alpha
Helix 46	AF1	C	367	372	Right-handed alpha
Helix 47	AF2	C	403	410	Right-handed 310
Helix 48	AF3	C	416	422	Right-handed alpha
Helix 49	AF4	C	615	625	Right-handed alpha
Helix 50	AF5	C	736	742	Right-handed alpha
Helix 51	AF6	C	745	753	Right-handed alpha
Helix 52	AF7	C	754	756	Right-handed 310
Helix 53	AF8	C	757	782	Right-handed alpha
Helix 54	AF9	C	810	814	Right-handed 310
Helix 55	AG1	C	815	825	Right-handed alpha
Helix 56	AG2	C	865	884	Right-handed alpha
Helix 57	AG3	C	885	890	Right-handed 310
Helix 58	AG4	C	896	907	Right-handed alpha
Helix 59	AG5	C	911	918	Right-handed alpha
Helix 60	AG6	C	918	940	Right-handed alpha
Helix 61	AG7	C	944	964	Right-handed alpha
Helix 62	AG8	C	965	967	Right-handed 310
Helix 63	AG9	C	975	981	Right-handed alpha
Helix 64	AH1	C	984	1032	Right-handed alpha
Helix 65	AH2	C	1115	1117	Right-handed 310

There are 42 sheets in PDB entry 8Y5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	A	190	197	anti-parallel
Strand 6	A	200	207	anti-parallel
Strand 7	A	224	229	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	564	565	parallel
Strand 3	C	574	576	anti-parallel
Strand 4	C	583	587	anti-parallel
Strand 5	C	545	553	anti-parallel
Strand 6	C	537	542	anti-parallel
Strand 7	C	325	326	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	241	anti-parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	132	anti-parallel
Strand 6	A	164	170	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	314	first strand
Strand 2	A	593	598	anti-parallel
Strand 3	A	608	612	anti-parallel
Strand 4	A	647	650	anti-parallel
Strand 5	A	641	643	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	396	402	anti-parallel
Strand 3	A	507	513	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	545	553	anti-parallel
Strand 3	A	584	587	anti-parallel
Strand 4	A	574	575	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	659	first strand
Strand 2	A	690	696	parallel
Strand 3	A	669	674	anti-parallel
Strand 4	A	663	666	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	703	first strand
Strand 2	B	787	789	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	727	first strand
Strand 2	A	1058	1076	anti-parallel
Strand 3	A	1052	1055	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1046	1049	first strand
Strand 2	A	1058	1076	anti-parallel
Strand 3	A	1093	1096	anti-parallel
Strand 4	A	1101	1104	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	735	first strand
Strand 2	A	857	860	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	C	701	702	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1080	1081	first strand
Strand 2	A	1132	1133	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1089	first strand
Strand 2	A	1119	1124	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	265	269	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	190	197	anti-parallel
Strand 6	B	200	207	anti-parallel
Strand 7	B	225	229	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	131	anti-parallel
Strand 6	B	169	171	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	591	598	anti-parallel
Strand 3	B	608	612	anti-parallel
Strand 4	B	647	650	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	537	542	parallel
Strand 3	B	545	550	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	379	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	507	511	anti-parallel
Strand 4	B	398	402	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	491	493	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	583	585	anti-parallel
Strand 3	B	574	576	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	C	42	43	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	659	first strand
Strand 2	B	690	696	parallel
Strand 3	B	669	674	anti-parallel
Strand 4	B	663	666	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	703	first strand
Strand 2	C	787	789	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	727	first strand
Strand 2	B	1058	1076	anti-parallel
Strand 3	B	1046	1055	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	727	first strand
Strand 2	B	1058	1076	anti-parallel
Strand 3	B	1093	1096	anti-parallel
Strand 4	B	1101	1104	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	735	first strand
Strand 2	B	857	860	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1119	1124	first strand
Strand 2	B	1085	1089	anti-parallel
Strand 3	B	1080	1081	anti-parallel
Strand 4	B	1132	1133	parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	265	269	anti-parallel
Strand 4	C	90	94	anti-parallel
Strand 5	C	190	197	anti-parallel
Strand 6	C	200	207	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	131	anti-parallel
Strand 6	C	168	170	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	591	598	anti-parallel
Strand 3	C	608	612	anti-parallel
Strand 4	C	647	650	anti-parallel
Strand 5	C	642	643	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	397	402	anti-parallel
Strand 3	C	507	513	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	491	493	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	487	488	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	659	first strand
Strand 2	C	690	696	parallel
Strand 3	C	669	674	anti-parallel
Strand 4	C	663	666	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	712	first strand
Strand 2	C	1073	1076	anti-parallel
Strand 3	C	1093	1096	anti-parallel
Strand 4	C	1101	1104	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	727	first strand
Strand 2	C	1058	1069	anti-parallel
Strand 3	C	1046	1055	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	732	735	first strand
Strand 2	C	857	860	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1119	1124	first strand
Strand 2	C	1085	1089	anti-parallel
Strand 3	C	1080	1081	anti-parallel
Strand 4	C	1132	1133	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5J