Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y5W entry

There are 2 chains in PDB entry 8Y5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 588
B
 LYS 2ALA 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8Y5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
10 23Right-handed alpha
Helix 3
AA3
A
24 29Right-handed alpha
Helix 4
AA4
A
32 51Right-handed alpha
Helix 5
AA5
A
54 59Right-handed alpha
Helix 6
AA6
A
61 69Right-handed alpha
Helix 7
AA7
A
73 79Right-handed alpha
Helix 8
AA8
A
83 102Right-handed alpha
Helix 9
AA9
A
103 117Right-handed alpha
Helix 10
AB1
A
119 136Right-handed alpha
Helix 11
AB2
A
139 161Right-handed alpha
Helix 12
AB3
A
232 253Right-handed alpha
Helix 13
AB4
A
259 273Right-handed alpha
Helix 14
AB5
A
280 308Right-handed alpha
Helix 15
AB6
A
311 317Right-handed alpha
Helix 16
AB7
A
323 341Right-handed alpha
Helix 17
AB8
A
344 364Right-handed alpha
Helix 18
AB9
A
384 395Right-handed alpha
Helix 19
AC1
A
396 398Right-handed 310
Helix 20
AC2
A
423 429Right-handed alpha
Helix 21
AC3
A
432 452Right-handed alpha
Helix 22
AC4
A
453 462Right-handed alpha
Helix 23
AC5
A
463 468Right-handed 310
Helix 24
AC6
A
469 485Right-handed alpha
Helix 25
AC7
A
489 496Right-handed alpha
Helix 26
AC8
A
497 507Right-handed alpha
Helix 27
AC9
A
511 524Right-handed alpha
Helix 28
AD1
A
533 541Right-handed alpha
Helix 29
AD2
A
546 572Right-handed alpha
Helix 30
AD3
A
572 578Right-handed alpha
Helix 31
AD4
B
3 10Right-handed alpha
Helix 32
AD5
B
10 23Right-handed alpha
Helix 33
AD6
B
24 29Right-handed alpha
Helix 34
AD7
B
30 33Right-handed 310
Helix 35
AD8
B
34 50Right-handed alpha
Helix 36
AD9
B
54 60Right-handed alpha
Helix 37
AE1
B
61 69Right-handed alpha
Helix 38
AE2
B
73 80Right-handed alpha
Helix 39
AE3
B
83 102Right-handed alpha
Helix 40
AE4
B
103 116Right-handed alpha
Helix 41
AE5
B
119 135Right-handed alpha
Helix 42
AE6
B
140 147Right-handed alpha
Helix 43
AE7
B
147 162Right-handed alpha
Helix 44
AE8
B
231 246Right-handed alpha
Helix 45
AE9
B
249 254Right-handed alpha
Helix 46
AF1
B
259 273Right-handed alpha
Helix 47
AF2
B
282 308Right-handed alpha
Helix 48
AF3
B
324 339Right-handed alpha
Helix 49
AF4
B
344 363Right-handed alpha
Helix 50
AF5
B
371 375Right-handed 310
Helix 51
AF6
B
384 394Right-handed alpha
Helix 52
AF7
B
395 398Right-handed 310
Helix 53
AF8
B
423 429Right-handed alpha
Helix 54
AF9
B
432 452Right-handed alpha
Helix 55
AG1
B
453 461Right-handed alpha
Helix 56
AG2
B
471 485Right-handed alpha
Helix 57
AG3
B
489 508Right-handed alpha
Helix 58
AG4
B
511 524Right-handed alpha
Helix 59
AG5
B
533 541Right-handed alpha
Helix 60
AG6
B
546 571Right-handed alpha
Helix 61
AG7
B
573 578Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8Y5W.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 403first strand
Strand 2
B
418 420anti-parallel
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