Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y5X entry

There are 2 chains in PDB entry 8Y5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 588
B
 LYS 2ALA 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8Y5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
10 23Right-handed alpha
Helix 3
AA3
A
24 29Right-handed alpha
Helix 4
AA4
A
32 51Right-handed alpha
Helix 5
AA5
A
54 70Right-handed alpha
Helix 6
AA6
A
73 81Right-handed alpha
Helix 7
AA7
A
83 102Right-handed alpha
Helix 8
AA8
A
103 117Right-handed alpha
Helix 9
AA9
A
119 136Right-handed alpha
Helix 10
AB1
A
139 161Right-handed alpha
Helix 11
AB2
A
231 254Right-handed alpha
Helix 12
AB3
A
255 258Right-handed 310
Helix 13
AB4
A
259 273Right-handed alpha
Helix 14
AB5
A
280 307Right-handed alpha
Helix 15
AB6
A
323 341Right-handed alpha
Helix 16
AB7
A
344 364Right-handed alpha
Helix 17
AB8
A
370 376Right-handed alpha
Helix 18
AB9
A
384 396Right-handed alpha
Helix 19
AC1
A
423 429Right-handed alpha
Helix 20
AC2
A
432 452Right-handed alpha
Helix 21
AC3
A
453 463Right-handed alpha
Helix 22
AC4
A
464 468Right-handed 310
Helix 23
AC5
A
469 485Right-handed alpha
Helix 24
AC6
A
489 508Right-handed alpha
Helix 25
AC7
A
511 524Right-handed alpha
Helix 26
AC8
A
533 541Right-handed alpha
Helix 27
AC9
A
546 572Right-handed alpha
Helix 28
AD1
A
573 578Right-handed alpha
Helix 29
AD2
B
3 10Right-handed alpha
Helix 30
AD3
B
10 23Right-handed alpha
Helix 31
AD4
B
24 29Right-handed alpha
Helix 32
AD5
B
32 51Right-handed alpha
Helix 33
AD6
B
54 61Right-handed alpha
Helix 34
AD7
B
61 69Right-handed alpha
Helix 35
AD8
B
73 81Right-handed alpha
Helix 36
AD9
B
83 102Right-handed alpha
Helix 37
AE1
B
103 117Right-handed alpha
Helix 38
AE2
B
119 136Right-handed alpha
Helix 39
AE3
B
139 161Right-handed alpha
Helix 40
AE4
B
231 254Right-handed alpha
Helix 41
AE5
B
255 258Right-handed 310
Helix 42
AE6
B
259 273Right-handed alpha
Helix 43
AE7
B
280 307Right-handed alpha
Helix 44
AE8
B
323 341Right-handed alpha
Helix 45
AE9
B
344 364Right-handed alpha
Helix 46
AF1
B
370 376Right-handed alpha
Helix 47
AF2
B
384 396Right-handed alpha
Helix 48
AF3
B
423 429Right-handed alpha
Helix 49
AF4
B
432 452Right-handed alpha
Helix 50
AF5
B
453 463Right-handed alpha
Helix 51
AF6
B
464 468Right-handed 310
Helix 52
AF7
B
469 485Right-handed alpha
Helix 53
AF8
B
489 508Right-handed alpha
Helix 54
AF9
B
511 524Right-handed alpha
Helix 55
AG1
B
533 541Right-handed alpha
Helix 56
AG2
B
546 572Right-handed alpha
Helix 57
AG3
B
573 578Right-handed alpha
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There are no sheets in PDB entry 8Y5X
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il