Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y62 entry

There are 5 chains in PDB entry 8Y62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	PHE 354
B	ASP 5	ASN 340
C	ILE 9	ARG 62
E	VAL 2	LEU 247
R	VAL 24	LEU 317

There are 30 helices in PDB entry 8Y62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	31	Right-handed alpha
Helix 2	AA2	A	45	52	Right-handed alpha
Helix 3	AA3	A	207	212	Right-handed alpha
Helix 4	AA4	A	213	216	Right-handed 310
Helix 5	AA5	A	244	255	Right-handed alpha
Helix 6	AA6	A	270	279	Right-handed alpha
Helix 7	AA7	A	295	309	Right-handed alpha
Helix 8	AA8	A	330	352	Right-handed alpha
Helix 9	AA9	B	6	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	B	35	37	Right-handed 310
Helix 12	AB3	C	10	23	Right-handed alpha
Helix 13	AB4	C	29	45	Right-handed alpha
Helix 14	AB5	C	46	48	Right-handed 310
Helix 15	AB6	C	53	57	Right-handed 310
Helix 16	AB7	E	28	32	Right-handed 310
Helix 17	AB8	E	53	56	Right-handed 310
Helix 18	AB9	E	62	65	Right-handed 310
Helix 19	AC1	E	220	224	Right-handed 310
Helix 20	AC2	R	27	51	Right-handed alpha
Helix 21	AC3	R	58	88	Right-handed alpha
Helix 22	AC4	R	94	129	Right-handed alpha
Helix 23	AC5	R	129	136	Right-handed alpha
Helix 24	AC6	R	138	163	Right-handed alpha
Helix 25	AC7	R	186	209	Right-handed alpha
Helix 26	AC8	R	210	231	Right-handed alpha
Helix 27	AC9	R	238	275	Right-handed alpha
Helix 28	AD1	R	278	283	Right-handed alpha
Helix 29	AD2	R	283	303	Right-handed alpha
Helix 30	AD3	R	306	317	Right-handed alpha

There are 14 sheets in PDB entry 8Y62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	266	269	parallel
Strand 6	A	321	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	94	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	46	51	anti-parallel
Strand 3	E	33	38	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	205	208	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	186	190	anti-parallel
Strand 3	E	174	179	anti-parallel
Strand 4	E	226	231	anti-parallel
Strand 5	E	243	244	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	164	166	first strand
Strand 2	R	176	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y62

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y62