Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y64

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y64 entry

There are 2 chains in PDB entry 8Y64 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 503
B	LYS 3	LYS 503

There are 46 helices in PDB entry 8Y64. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	20	Right-handed alpha
Helix 2	AA2	A	34	46	Right-handed alpha
Helix 3	AA3	A	75	79	Right-handed 310
Helix 4	AA4	A	81	88	Right-handed alpha
Helix 5	AA5	A	95	107	Right-handed alpha
Helix 6	AA6	A	118	126	Right-handed 310
Helix 7	AA7	A	130	134	Right-handed 310
Helix 8	AA8	A	135	139	Right-handed 310
Helix 9	AA9	A	191	203	Right-handed alpha
Helix 10	AB1	A	219	227	Right-handed alpha
Helix 11	AB2	A	235	245	Right-handed alpha
Helix 12	AB3	A	324	329	Right-handed alpha
Helix 13	AB4	A	329	346	Right-handed alpha
Helix 14	AB5	A	355	359	Right-handed 310
Helix 15	AB6	A	368	375	Right-handed alpha
Helix 16	AB7	A	378	391	Right-handed alpha
Helix 17	AB8	A	393	397	Right-handed 310
Helix 18	AB9	A	413	425	Right-handed alpha
Helix 19	AC1	A	443	448	Right-handed alpha
Helix 20	AC2	A	449	454	Right-handed 310
Helix 21	AC3	A	466	471	Right-handed 310
Helix 22	AC4	A	480	485	Right-handed alpha
Helix 23	AC5	A	486	501	Right-handed alpha
Helix 24	AC6	B	9	20	Right-handed alpha
Helix 25	AC7	B	34	46	Right-handed alpha
Helix 26	AC8	B	75	79	Right-handed 310
Helix 27	AC9	B	81	88	Right-handed alpha
Helix 28	AD1	B	95	107	Right-handed alpha
Helix 29	AD2	B	118	126	Right-handed 310
Helix 30	AD3	B	130	134	Right-handed 310
Helix 31	AD4	B	135	139	Right-handed 310
Helix 32	AD5	B	193	203	Right-handed alpha
Helix 33	AD6	B	219	227	Right-handed alpha
Helix 34	AD7	B	235	245	Right-handed alpha
Helix 35	AD8	B	324	329	Right-handed alpha
Helix 36	AD9	B	329	346	Right-handed alpha
Helix 37	AE1	B	355	359	Right-handed 310
Helix 38	AE2	B	368	375	Right-handed alpha
Helix 39	AE3	B	378	392	Right-handed alpha
Helix 40	AE4	B	393	397	Right-handed 310
Helix 41	AE5	B	413	425	Right-handed alpha
Helix 42	AE6	B	443	448	Right-handed alpha
Helix 43	AE7	B	450	455	Right-handed alpha
Helix 44	AE8	B	466	471	Right-handed 310
Helix 45	AE9	B	480	485	Right-handed alpha
Helix 46	AF1	B	486	501	Right-handed alpha

There are 12 sheets in PDB entry 8Y64. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	50	53	parallel
Strand 3	A	65	68	anti-parallel
Strand 4	A	313	316	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	249	252	parallel
Strand 3	A	259	261	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	296	308	anti-parallel
Strand 3	A	266	280	anti-parallel
Strand 4	A	210	216	anti-parallel
Strand 5	A	158	162	anti-parallel
Strand 6	A	169	172	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	296	308	anti-parallel
Strand 3	A	183	186	anti-parallel
Strand 4	A	176	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	291	first strand
Strand 2	B	476	478	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	362	367	anti-parallel
Strand 3	A	401	406	parallel
Strand 4	A	459	464	parallel
Strand 5	A	431	434	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	478	first strand
Strand 2	B	289	291	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	50	53	parallel
Strand 3	B	65	68	anti-parallel
Strand 4	B	313	316	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	249	252	parallel
Strand 3	B	259	261	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	296	308	anti-parallel
Strand 3	B	183	185	anti-parallel
Strand 4	B	176	178	anti-parallel
Strand 5	B	152	154	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	296	308	anti-parallel
Strand 3	B	266	280	anti-parallel
Strand 4	B	210	216	anti-parallel
Strand 5	B	158	162	anti-parallel
Strand 6	B	169	172	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	353	first strand
Strand 2	B	362	367	anti-parallel
Strand 3	B	401	406	parallel
Strand 4	B	459	464	parallel
Strand 5	B	431	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y64

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y64