Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y69 entry

There are 8 chains in PDB entry 8Y69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 33	THR 820
C	LYS 56	LYS 243
E	VAL 21	SER 549
G	LYS 41	CYS 141
D	CYS 33	THR 820
H	LYS 56	LYS 243
I	VAL 21	SER 549
J	LYS 41	CYS 141

There are 46 helices in PDB entry 8Y69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	121	126	Right-handed alpha
Helix 2	AA2	A	169	175	Right-handed alpha
Helix 3	AA3	A	241	247	Right-handed 310
Helix 4	AA4	A	381	386	Right-handed 310
Helix 5	AA5	A	466	473	Right-handed alpha
Helix 6	AA6	A	538	555	Right-handed alpha
Helix 7	AA7	A	555	564	Right-handed alpha
Helix 8	AA8	A	571	601	Right-handed alpha
Helix 9	AA9	A	604	614	Right-handed alpha
Helix 10	AB1	A	616	649	Right-handed alpha
Helix 11	AB2	A	661	683	Right-handed alpha
Helix 12	AB3	A	703	732	Right-handed alpha
Helix 13	AB4	A	739	741	Right-handed 310
Helix 14	AB5	A	742	760	Right-handed alpha
Helix 15	AB6	A	760	768	Right-handed alpha
Helix 16	AB7	A	778	790	Right-handed alpha
Helix 17	AB8	A	796	805	Right-handed alpha
Helix 18	AB9	A	805	818	Right-handed alpha
Helix 19	AC1	C	138	149	Right-handed alpha
Helix 20	AC2	C	163	170	Right-handed alpha
Helix 21	AC3	C	186	198	Right-handed alpha
Helix 22	AC4	C	218	233	Right-handed alpha
Helix 23	AC5	C	233	243	Right-handed alpha
Helix 24	AC6	E	511	515	Right-handed 310
Helix 25	AC7	E	533	537	Right-handed 310
Helix 26	AC8	D	169	174	Right-handed alpha
Helix 27	AC9	D	241	247	Right-handed 310
Helix 28	AD1	D	466	471	Right-handed alpha
Helix 29	AD2	D	472	474	Right-handed 310
Helix 30	AD3	D	538	552	Right-handed alpha
Helix 31	AD4	D	553	564	Right-handed alpha
Helix 32	AD5	D	571	601	Right-handed alpha
Helix 33	AD6	D	605	615	Right-handed alpha
Helix 34	AD7	D	617	648	Right-handed alpha
Helix 35	AD8	D	658	683	Right-handed alpha
Helix 36	AD9	D	703	727	Right-handed alpha
Helix 37	AE1	D	727	732	Right-handed alpha
Helix 38	AE2	D	743	766	Right-handed alpha
Helix 39	AE3	D	778	790	Right-handed alpha
Helix 40	AE4	D	795	804	Right-handed alpha
Helix 41	AE5	D	807	820	Right-handed alpha
Helix 42	AE6	H	102	106	Right-handed 310
Helix 43	AE7	H	138	150	Right-handed alpha
Helix 44	AE8	H	163	171	Right-handed alpha
Helix 45	AE9	H	186	198	Right-handed alpha
Helix 46	AF1	H	216	243	Right-handed alpha

There are 25 sheets in PDB entry 8Y69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	61	64	parallel
Strand 3	A	85	88	parallel
Strand 4	A	109	111	parallel
Strand 5	A	133	135	parallel
Strand 6	A	157	162	parallel
Strand 7	A	181	186	parallel
Strand 8	A	205	207	parallel
Strand 9	A	229	231	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	215	216	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	276	278	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	323	326	parallel
Strand 3	A	347	349	parallel
Strand 4	A	369	371	parallel
Strand 5	A	393	395	parallel
Strand 6	A	417	419	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	403	404	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	440	first strand
Strand 2	A	461	463	parallel
Strand 3	A	521	522	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	65	first strand
Strand 2	C	77	85	anti-parallel
Strand 3	C	180	182	anti-parallel
Strand 4	C	154	157	parallel
Strand 5	C	120	125	parallel
Strand 6	C	94	100	parallel
Strand 7	C	202	205	anti-parallel
Strand 8	C	58	65	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	444	448	anti-parallel
Strand 3	E	502	506	anti-parallel
Strand 4	E	493	497	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	482	484	first strand
Strand 2	E	470	476	anti-parallel
Strand 3	E	457	464	anti-parallel
Strand 4	E	516	523	anti-parallel
Strand 5	E	539	540	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	482	484	first strand
Strand 2	E	470	476	anti-parallel
Strand 3	E	457	464	anti-parallel
Strand 4	E	516	523	anti-parallel
Strand 5	E	544	546	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	75	first strand
Strand 2	G	60	65	anti-parallel
Strand 3	G	91	95	parallel
Strand 4	G	82	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	104	first strand
Strand 2	G	110	113	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	61	63	parallel
Strand 4	D	85	87	parallel
Strand 5	D	109	111	parallel
Strand 6	D	133	135	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	95	96	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	205	207	parallel
Strand 3	D	229	231	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	215	216	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	276	278	parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	324	326	parallel
Strand 3	D	348	349	parallel
Strand 4	D	369	371	parallel
Strand 5	D	393	395	parallel
Strand 6	D	417	419	parallel
Strand 7	D	438	440	parallel
Strand 8	D	461	463	parallel
Strand 9	D	521	522	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	65	first strand
Strand 2	H	77	85	anti-parallel
Strand 3	H	180	182	anti-parallel
Strand 4	H	153	157	parallel
Strand 5	H	120	125	parallel
Strand 6	H	94	100	parallel
Strand 7	H	202	206	anti-parallel
Strand 8	H	58	65	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	26	first strand
Strand 2	I	443	449	anti-parallel
Strand 3	I	502	507	anti-parallel
Strand 4	I	492	497	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	482	484	first strand
Strand 2	I	470	476	anti-parallel
Strand 3	I	457	464	anti-parallel
Strand 4	I	516	523	anti-parallel
Strand 5	I	539	540	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	482	484	first strand
Strand 2	I	470	476	anti-parallel
Strand 3	I	457	464	anti-parallel
Strand 4	I	516	523	anti-parallel
Strand 5	I	544	546	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	65	first strand
Strand 2	J	70	75	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	82	85	first strand
Strand 2	J	92	95	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	101	106	first strand
Strand 2	J	109	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y69

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y69