Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y6A entry

There are 4 chains in PDB entry 8Y6A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	GLY 605
B	ASN 334	GLU 516
C	GLN 1	LYS 228
D	GLU 1	GLY 212

There are 35 helices in PDB entry 8Y6A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	53	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	90	101	Right-handed alpha
Helix 4	AA4	A	109	128	Right-handed alpha
Helix 5	AA5	A	146	154	Right-handed alpha
Helix 6	AA6	A	157	194	Right-handed alpha
Helix 7	AA7	A	198	205	Right-handed alpha
Helix 8	AA8	A	220	252	Right-handed alpha
Helix 9	AA9	A	275	282	Right-handed 310
Helix 10	AB1	A	293	300	Right-handed alpha
Helix 11	AB2	A	303	318	Right-handed alpha
Helix 12	AB3	A	324	331	Right-handed alpha
Helix 13	AB4	A	365	385	Right-handed alpha
Helix 14	AB5	A	389	393	Right-handed 310
Helix 15	AB6	A	399	413	Right-handed alpha
Helix 16	AB7	A	414	421	Right-handed alpha
Helix 17	AB8	A	431	446	Right-handed alpha
Helix 18	AB9	A	448	465	Right-handed alpha
Helix 19	AC1	A	469	471	Right-handed 310
Helix 20	AC2	A	472	485	Right-handed alpha
Helix 21	AC3	A	503	508	Right-handed alpha
Helix 22	AC4	A	513	533	Right-handed alpha
Helix 23	AC5	A	547	559	Right-handed alpha
Helix 24	AC6	A	565	575	Right-handed alpha
Helix 25	AC7	A	581	588	Right-handed alpha
Helix 26	AC8	A	589	599	Right-handed alpha
Helix 27	AC9	B	365	370	Right-handed alpha
Helix 28	AD1	B	383	387	Right-handed 310
Helix 29	AD2	B	406	410	Right-handed 310
Helix 30	AD3	B	416	421	Right-handed alpha
Helix 31	AD4	C	28	31	Right-handed 310
Helix 32	AD5	C	87	91	Right-handed 310
Helix 33	AD6	D	80	84	Right-handed 310
Helix 34	AD7	D	121	126	Right-handed alpha
Helix 35	AD8	D	182	189	Right-handed alpha

There are 15 sheets in PDB entry 8Y6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	355	356	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	401	anti-parallel
Strand 3	B	509	514	anti-parallel
Strand 4	B	431	433	anti-parallel
Strand 5	B	378	380	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	69	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	72	73	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	92	98	anti-parallel
Strand 5	C	121	123	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	190	198	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	190	198	anti-parallel
Strand 4	C	183	184	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	208	212	anti-parallel
Strand 3	C	224	225	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	29	first strand
Strand 2	D	63	76	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	139	first strand
Strand 2	D	173	181	anti-parallel
Strand 3	D	160	163	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	144	150	anti-parallel
Strand 3	D	192	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y6A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6A