Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y6B entry

There are 3 chains in PDB entry 8Y6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 233	ASN 718
D	LYS 41	ALA 557
B	ASN 233	VAL 502

There are 47 helices in PDB entry 8Y6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	248	255	Right-handed alpha
Helix 2	AA2	A	258	280	Right-handed alpha
Helix 3	AA3	A	304	319	Right-handed alpha
Helix 4	AA4	A	362	378	Right-handed alpha
Helix 5	AA5	A	384	389	Right-handed alpha
Helix 6	AA6	A	415	428	Right-handed alpha
Helix 7	AA7	A	431	436	Right-handed 310
Helix 8	AA8	A	464	468	Right-handed 310
Helix 9	AA9	A	549	559	Right-handed alpha
Helix 10	AB1	A	566	577	Right-handed alpha
Helix 11	AB2	A	594	601	Right-handed 310
Helix 12	AB3	A	672	675	Right-handed 310
Helix 13	AB4	A	687	690	Right-handed 310
Helix 14	AB5	D	178	191	Right-handed alpha
Helix 15	AB6	D	212	214	Right-handed 310
Helix 16	AB7	B	248	255	Right-handed alpha
Helix 17	AB8	B	258	280	Right-handed alpha
Helix 18	AB9	B	304	319	Right-handed alpha
Helix 19	AC1	B	362	378	Right-handed alpha
Helix 20	AC2	B	383	389	Right-handed alpha
Helix 21	AC3	B	415	428	Right-handed alpha
Helix 22	AC4	B	431	436	Right-handed 310
Helix 23	AC5	B	462	469	Right-handed alpha
Helix 24	AC6	B	549	559	Right-handed alpha
Helix 25	AC7	B	566	574	Right-handed alpha
Helix 26	AC8	B	594	601	Right-handed 310
Helix 27	AC9	B	672	675	Right-handed 310
Helix 28	AD1	B	687	690	Right-handed 310
Helix 29	AD2	C	248	255	Right-handed alpha
Helix 30	AD3	C	258	282	Right-handed alpha
Helix 31	AD4	C	304	319	Right-handed alpha
Helix 32	AD5	C	362	378	Right-handed alpha
Helix 33	AD6	C	383	389	Right-handed alpha
Helix 34	AD7	C	415	428	Right-handed alpha
Helix 35	AD8	C	431	436	Right-handed 310
Helix 36	AD9	C	469	472	Right-handed 310
Helix 37	AE1	C	549	559	Right-handed alpha
Helix 38	AE2	C	566	577	Right-handed alpha
Helix 39	AE3	C	597	601	Right-handed 310
Helix 40	AE4	C	672	675	Right-handed 310
Helix 41	AE5	C	687	690	Right-handed 310
Helix 42	AE6	F	178	180	Right-handed 310
Helix 43	AE7	F	181	191	Right-handed alpha
Helix 44	AE8	F	215	219	Right-handed 310
Helix 45	AE9	E	178	180	Right-handed 310
Helix 46	AF1	E	181	191	Right-handed alpha
Helix 47	AF2	E	212	214	Right-handed 310

There are 57 sheets in PDB entry 8Y6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	292	first strand
Strand 2	A	239	247	parallel
Strand 3	A	326	330	parallel
Strand 4	A	355	358	parallel
Strand 5	A	341	343	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	475	first strand
Strand 2	A	478	479	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	504	first strand
Strand 2	A	514	515	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	540	543	anti-parallel
Strand 3	A	546	548	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	628	first strand
Strand 2	A	631	643	anti-parallel
Strand 3	A	646	648	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	664	first strand
Strand 2	A	667	670	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	694	first strand
Strand 2	A	700	702	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	713	714	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	52	56	anti-parallel
Strand 3	D	71	75	parallel
Strand 4	D	95	99	parallel
Strand 5	D	119	122	parallel
Strand 6	D	144	145	parallel
Strand 7	D	167	169	parallel
Strand 8	D	194	195	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	126	130	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	199	202	parallel
Strand 3	D	209	210	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	231	first strand
Strand 2	D	546	554	anti-parallel
Strand 3	D	533	538	anti-parallel
Strand 4	D	525	530	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	244	first strand
Strand 2	D	247	254	anti-parallel
Strand 3	D	259	264	anti-parallel
Strand 4	D	273	279	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	290	first strand
Strand 2	D	295	301	anti-parallel
Strand 3	D	307	311	anti-parallel
Strand 4	D	318	322	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	339	first strand
Strand 2	D	344	350	anti-parallel
Strand 3	D	357	362	anti-parallel
Strand 4	D	367	373	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	388	first strand
Strand 2	D	395	403	anti-parallel
Strand 3	D	409	414	anti-parallel
Strand 4	D	419	425	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	440	first strand
Strand 2	D	443	450	anti-parallel
Strand 3	D	452	460	anti-parallel
Strand 4	D	465	474	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	484	first strand
Strand 2	D	487	492	anti-parallel
Strand 3	D	499	505	anti-parallel
Strand 4	D	510	517	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	292	first strand
Strand 2	B	239	247	parallel
Strand 3	B	326	331	parallel
Strand 4	B	355	359	parallel
Strand 5	B	341	343	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	475	first strand
Strand 2	B	478	479	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	504	first strand
Strand 2	B	514	515	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	535	first strand
Strand 2	B	540	543	anti-parallel
Strand 3	B	546	548	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	605	606	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	628	first strand
Strand 2	B	631	643	anti-parallel
Strand 3	B	646	648	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	664	first strand
Strand 2	B	667	670	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	692	694	first strand
Strand 2	B	700	702	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	292	first strand
Strand 2	C	239	247	parallel
Strand 3	C	326	331	parallel
Strand 4	C	356	359	parallel
Strand 5	C	341	343	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	475	first strand
Strand 2	C	478	479	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	495	496	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	504	first strand
Strand 2	C	514	515	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	535	first strand
Strand 2	C	540	543	anti-parallel
Strand 3	C	546	548	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	564	first strand
Strand 2	C	605	606	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	585	first strand
Strand 2	C	590	591	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	628	first strand
Strand 2	C	631	641	anti-parallel
Strand 3	C	647	648	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	664	first strand
Strand 2	C	667	670	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	692	694	first strand
Strand 2	C	700	702	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	706	707	first strand
Strand 2	C	713	714	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	52	56	anti-parallel
Strand 3	F	71	75	parallel
Strand 4	F	95	99	parallel
Strand 5	F	119	123	parallel
Strand 6	F	143	145	parallel
Strand 7	F	167	169	parallel
Strand 8	F	194	195	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	126	127	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	176	first strand
Strand 2	F	199	202	parallel
Strand 3	F	209	210	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	232	first strand
Strand 2	F	545	554	anti-parallel
Strand 3	F	533	538	anti-parallel
Strand 4	F	525	530	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	243	first strand
Strand 2	F	248	254	anti-parallel
Strand 3	F	259	265	anti-parallel
Strand 4	F	272	279	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	290	first strand
Strand 2	F	295	301	anti-parallel
Strand 3	F	307	312	anti-parallel
Strand 4	F	317	323	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	339	first strand
Strand 2	F	344	350	anti-parallel
Strand 3	F	357	362	anti-parallel
Strand 4	F	367	373	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	379	388	first strand
Strand 2	F	395	403	anti-parallel
Strand 3	F	409	414	anti-parallel
Strand 4	F	419	425	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	432	440	first strand
Strand 2	F	443	450	anti-parallel
Strand 3	F	452	460	anti-parallel
Strand 4	F	465	474	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	479	484	first strand
Strand 2	F	487	492	anti-parallel
Strand 3	F	499	505	anti-parallel
Strand 4	F	510	517	anti-parallel

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There are 8 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	52	56	anti-parallel
Strand 3	E	71	75	parallel
Strand 4	E	95	99	parallel
Strand 5	E	119	123	parallel
Strand 6	E	143	145	parallel
Strand 7	E	167	169	parallel
Strand 8	E	194	195	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	126	130	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	E	209	210	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	232	first strand
Strand 2	E	545	554	anti-parallel
Strand 3	E	533	538	anti-parallel
Strand 4	E	525	530	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	244	first strand
Strand 2	E	247	254	anti-parallel
Strand 3	E	259	266	anti-parallel
Strand 4	E	271	279	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	290	first strand
Strand 2	E	295	301	anti-parallel
Strand 3	E	307	311	anti-parallel
Strand 4	E	318	323	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	339	first strand
Strand 2	E	344	350	anti-parallel
Strand 3	E	357	362	anti-parallel
Strand 4	E	367	373	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	388	first strand
Strand 2	E	395	403	anti-parallel
Strand 3	E	409	414	anti-parallel
Strand 4	E	419	425	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	432	439	first strand
Strand 2	E	444	450	anti-parallel
Strand 3	E	452	460	anti-parallel
Strand 4	E	465	474	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	479	483	first strand
Strand 2	E	488	492	anti-parallel
Strand 3	E	499	505	anti-parallel
Strand 4	E	510	517	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6B