Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6H entry

There are 3 chains in PDB entry 8Y6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32LYS 1014
B
 GLN 1LYS 205
C
 GLU 1PRO 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 8Y6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 41Right-handed 310
Helix 2
AA2
A
44 63Right-handed alpha
Helix 3
AA3
A
63 89Right-handed alpha
Helix 4
AA4
A
106 155Right-handed alpha
Helix 5
AA5
A
172 187Right-handed alpha
Helix 6
AA6
A
187 211Right-handed alpha
Helix 7
AA7
A
211 220Right-handed alpha
Helix 8
AA8
A
221 238Right-handed alpha
Helix 9
AA9
A
238 247Right-handed alpha
Helix 10
AB1
A
247 259Right-handed alpha
Helix 11
AB2
A
260 268Right-handed alpha
Helix 12
AB3
A
269 323Right-handed alpha
Helix 13
AB4
A
327 348Right-handed alpha
Helix 14
AB5
A
349 371Right-handed alpha
Helix 15
AB6
A
697 702Right-handed alpha
Helix 16
AB7
A
703 706Right-handed 310
Helix 17
AB8
A
707 723Right-handed alpha
Helix 18
AB9
A
723 738Right-handed alpha
Helix 19
AC1
A
739 741Right-handed 310
Helix 20
AC2
A
744 798Right-handed alpha
Helix 21
AC3
A
810 820Right-handed alpha
Helix 22
AC4
A
824 828Right-handed 310
Helix 23
AC5
A
829 854Right-handed alpha
Helix 24
AC6
A
854 863Right-handed alpha
Helix 25
AC7
A
864 880Right-handed alpha
Helix 26
AC8
A
893 900Right-handed alpha
Helix 27
AC9
A
914 924Right-handed alpha
Helix 28
AD1
A
924 966Right-handed alpha
Helix 29
AD2
A
970 993Right-handed alpha
Helix 30
AD3
A
997 1014Right-handed alpha
Helix 31
AD4
C
28 30Right-handed 310
Helix 32
AD5
C
62 65Right-handed 310
Helix 33
AD6
C
87 91Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 8Y6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
76 80anti-parallel
Strand 4
B
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
50 54anti-parallel
Strand 6
B
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
138 145anti-parallel
Strand 3
B
179 185anti-parallel
Strand 4
B
165 169anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
116 120parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
32 39anti-parallel
Strand 5
C
46 52anti-parallel
Strand 6
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
116 120parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
150 154anti-parallel
Strand 3
C
184 187anti-parallel
Strand 4
C
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 147first strand
Strand 2
C
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 163first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
213 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il