Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6I entry

There are 3 chains in PDB entry 8Y6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32TYR 1021
B
 GLN 1ARG 217
C
 GLU 1ARG 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 8Y6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
44 63Right-handed alpha
Helix 3
AA3
A
64 89Right-handed alpha
Helix 4
AA4
A
106 157Right-handed alpha
Helix 5
AA5
A
170 187Right-handed alpha
Helix 6
AA6
A
187 211Right-handed alpha
Helix 7
AA7
A
211 220Right-handed alpha
Helix 8
AA8
A
221 238Right-handed alpha
Helix 9
AA9
A
238 259Right-handed alpha
Helix 10
AB1
A
262 268Right-handed alpha
Helix 11
AB2
A
269 323Right-handed alpha
Helix 12
AB3
A
327 348Right-handed alpha
Helix 13
AB4
A
349 371Right-handed alpha
Helix 14
AB5
A
700 706Right-handed 310
Helix 15
AB6
A
707 723Right-handed alpha
Helix 16
AB7
A
723 738Right-handed alpha
Helix 17
AB8
A
744 799Right-handed alpha
Helix 18
AB9
A
800 806Right-handed alpha
Helix 19
AC1
A
810 820Right-handed alpha
Helix 20
AC2
A
820 825Right-handed alpha
Helix 21
AC3
A
826 828Right-handed 310
Helix 22
AC4
A
829 854Right-handed alpha
Helix 23
AC5
A
854 863Right-handed alpha
Helix 24
AC6
A
864 881Right-handed alpha
Helix 25
AC7
A
892 903Right-handed alpha
Helix 26
AC8
A
903 911Right-handed alpha
Helix 27
AC9
A
912 924Right-handed alpha
Helix 28
AD1
A
924 966Right-handed alpha
Helix 29
AD2
A
970 993Right-handed alpha
Helix 30
AD3
A
997 1014Right-handed alpha
Helix 31
AD4
B
84 88Right-handed 310
Helix 32
AD5
C
28 30Right-handed 310
Helix 33
AD6
C
87 91Right-handed 310
Helix 34
AD7
C
165 167Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 8Y6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
50 54anti-parallel
Strand 6
B
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
183 185anti-parallel
Strand 4
B
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
211 215anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
116 120parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
32 39anti-parallel
Strand 5
C
46 52anti-parallel
Strand 6
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
116 120parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
150 154anti-parallel
Strand 3
C
184 192anti-parallel
Strand 4
C
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
150 154anti-parallel
Strand 3
C
184 192anti-parallel
Strand 4
C
172 179anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
213 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il