Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6J entry

There are 2 chains in PDB entry 8Y6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 56LYS 552
B
 ALA 56LYS 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8Y6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 70Right-handed alpha
Helix 2
AA2
A
71 94Right-handed alpha
Helix 3
AA3
A
103 116Right-handed alpha
Helix 4
AA4
A
124 128Right-handed 310
Helix 5
AA5
A
129 144Right-handed alpha
Helix 6
AA6
A
144 159Right-handed alpha
Helix 7
AA7
A
220 245Right-handed alpha
Helix 8
AA8
A
245 256Right-handed alpha
Helix 9
AA9
A
258 272Right-handed alpha
Helix 10
AB1
A
283 287Right-handed 310
Helix 11
AB2
A
289 302Right-handed alpha
Helix 12
AB3
A
306 323Right-handed alpha
Helix 13
AB4
A
324 333Right-handed alpha
Helix 14
AB5
A
344 371Right-handed alpha
Helix 15
AB6
A
373 377Right-handed 310
Helix 16
AB7
A
380 396Right-handed alpha
Helix 17
AB8
A
404 408Right-handed 310
Helix 18
AB9
A
409 422Right-handed alpha
Helix 19
AC1
A
424 430Right-handed alpha
Helix 20
AC2
A
447 456Right-handed alpha
Helix 21
AC3
A
459 473Right-handed alpha
Helix 22
AC4
A
473 480Right-handed alpha
Helix 23
AC5
A
485 499Right-handed alpha
Helix 24
AC6
A
507 511Right-handed 310
Helix 25
AC7
A
524 529Right-handed 310
Helix 26
AC8
A
530 546Right-handed alpha
Helix 27
AC9
B
57 70Right-handed alpha
Helix 28
AD1
B
71 94Right-handed alpha
Helix 29
AD2
B
103 116Right-handed alpha
Helix 30
AD3
B
124 128Right-handed 310
Helix 31
AD4
B
129 144Right-handed alpha
Helix 32
AD5
B
144 159Right-handed alpha
Helix 33
AD6
B
220 245Right-handed alpha
Helix 34
AD7
B
245 256Right-handed alpha
Helix 35
AD8
B
258 272Right-handed alpha
Helix 36
AD9
B
283 287Right-handed 310
Helix 37
AE1
B
289 302Right-handed alpha
Helix 38
AE2
B
306 323Right-handed alpha
Helix 39
AE3
B
324 333Right-handed alpha
Helix 40
AE4
B
344 371Right-handed alpha
Helix 41
AE5
B
373 377Right-handed 310
Helix 42
AE6
B
380 398Right-handed alpha
Helix 43
AE7
B
404 408Right-handed 310
Helix 44
AE8
B
409 422Right-handed alpha
Helix 45
AE9
B
424 430Right-handed alpha
Helix 46
AF1
B
447 456Right-handed alpha
Helix 47
AF2
B
459 473Right-handed alpha
Helix 48
AF3
B
473 480Right-handed alpha
Helix 49
AF4
B
485 499Right-handed alpha
Helix 50
AF5
B
507 511Right-handed 310
Helix 51
AF6
B
524 529Right-handed 310
Helix 52
AF7
B
530 546Right-handed alpha
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There are no sheets in PDB entry 8Y6J
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