Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6K entry

There is 1 chain in PDB entry 8Y6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8ASP 1008
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 8Y6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
57 59Right-handed 310
Helix 5
AA5
A
60 72Right-handed alpha
Helix 6
AA6
A
73 80Right-handed 310
Helix 7
AA7
A
93 106Right-handed alpha
Helix 8
AA8
A
128 137Right-handed alpha
Helix 9
AA9
A
157 171Right-handed alpha
Helix 10
AB1
A
203 208Right-handed alpha
Helix 11
AB2
A
249 254Right-handed alpha
Helix 12
AB3
A
266 278Right-handed alpha
Helix 13
AB4
A
299 306Right-handed alpha
Helix 14
AB5
A
315 320Right-handed alpha
Helix 15
AB6
A
326 342Right-handed alpha
Helix 16
AB7
A
399 403Right-handed 310
Helix 17
AB8
A
404 425Right-handed alpha
Helix 18
AB9
A
428 444Right-handed alpha
Helix 19
AC1
A
461 465Right-handed 310
Helix 20
AC2
A
475 480Right-handed 310
Helix 21
AC3
A
510 521Right-handed alpha
Helix 22
AC4
A
540 551Right-handed alpha
Helix 23
AC5
A
556 562Right-handed 310
Helix 24
AC6
A
564 580Right-handed alpha
Helix 25
AC7
A
587 594Right-handed alpha
Helix 26
AC8
A
596 611Right-handed alpha
Helix 27
AC9
A
705 707Right-handed 310
Helix 28
AD1
A
915 959Right-handed alpha
Helix 29
AD2
A
963 1008Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8Y6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
111 114parallel
Strand 3
A
89 90parallel
Strand 4
A
213 216parallel
Strand 5
A
384 390parallel
Strand 6
A
376 381anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 185first strand
Strand 2
A
195 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
369 372anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
291 298anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
360 365anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 711first strand
Strand 2
A
716 718anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il