Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6L entry

There are 2 chains in PDB entry 8Y6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25GLU 554
B
 ALA 25GLU 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8Y6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 49Right-handed alpha
Helix 2
AA2
A
60 73Right-handed alpha
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
86 98Right-handed alpha
Helix 5
AA5
A
101 114Right-handed alpha
Helix 6
AA6
A
208 234Right-handed alpha
Helix 7
AA7
A
238 245Right-handed alpha
Helix 8
AA8
A
247 260Right-handed alpha
Helix 9
AA9
A
279 284Right-handed alpha
Helix 10
AB1
A
285 293Right-handed alpha
Helix 11
AB2
A
295 308Right-handed alpha
Helix 12
AB3
A
327 331Right-handed 310
Helix 13
AB4
A
336 362Right-handed alpha
Helix 14
AB5
A
365 369Right-handed 310
Helix 15
AB6
A
372 387Right-handed alpha
Helix 16
AB7
A
401 414Right-handed alpha
Helix 17
AB8
A
451 467Right-handed alpha
Helix 18
AB9
A
479 493Right-handed alpha
Helix 19
AC1
A
501 505Right-handed 310
Helix 20
AC2
A
524 540Right-handed alpha
Helix 21
AC3
A
541 544Right-handed 310
Helix 22
AC4
B
26 49Right-handed alpha
Helix 23
AC5
B
60 73Right-handed alpha
Helix 24
AC6
B
81 85Right-handed 310
Helix 25
AC7
B
86 98Right-handed alpha
Helix 26
AC8
B
101 114Right-handed alpha
Helix 27
AC9
B
208 234Right-handed alpha
Helix 28
AD1
B
238 245Right-handed alpha
Helix 29
AD2
B
247 260Right-handed alpha
Helix 30
AD3
B
279 284Right-handed alpha
Helix 31
AD4
B
285 293Right-handed alpha
Helix 32
AD5
B
295 308Right-handed alpha
Helix 33
AD6
B
327 331Right-handed 310
Helix 34
AD7
B
336 362Right-handed alpha
Helix 35
AD8
B
365 369Right-handed 310
Helix 36
AD9
B
372 387Right-handed alpha
Helix 37
AE1
B
401 414Right-handed alpha
Helix 38
AE2
B
451 467Right-handed alpha
Helix 39
AE3
B
479 493Right-handed alpha
Helix 40
AE4
B
501 505Right-handed 310
Helix 41
AE5
B
524 540Right-handed alpha
Helix 42
AE6
B
541 544Right-handed 310
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There are 2 sheets in PDB entry 8Y6L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
B
551 552anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
B
419 420anti-parallel
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