Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6M entry

There are 2 chains in PDB entry 8Y6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 38TRP 530
B
 ILE 38TRP 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8Y6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 62Right-handed alpha
Helix 2
AA2
A
72 85Right-handed alpha
Helix 3
AA3
A
98 112Right-handed alpha
Helix 4
AA4
A
113 124Right-handed alpha
Helix 5
AA5
A
187 214Right-handed alpha
Helix 6
AA6
A
214 223Right-handed alpha
Helix 7
AA7
A
227 241Right-handed alpha
Helix 8
AA8
A
250 256Right-handed 310
Helix 9
AA9
A
258 273Right-handed alpha
Helix 10
AB1
A
275 292Right-handed alpha
Helix 11
AB2
A
293 302Right-handed alpha
Helix 12
AB3
A
303 307Right-handed 310
Helix 13
AB4
A
313 339Right-handed alpha
Helix 14
AB5
A
342 346Right-handed 310
Helix 15
AB6
A
349 365Right-handed alpha
Helix 16
AB7
A
378 391Right-handed alpha
Helix 17
AB8
A
417 423Right-handed alpha
Helix 18
AB9
A
425 441Right-handed alpha
Helix 19
AC1
A
441 448Right-handed alpha
Helix 20
AC2
A
453 466Right-handed alpha
Helix 21
AC3
A
475 481Right-handed alpha
Helix 22
AC4
A
494 499Right-handed 310
Helix 23
AC5
A
500 516Right-handed alpha
Helix 24
AC6
A
517 519Right-handed 310
Helix 25
AC7
B
39 62Right-handed alpha
Helix 26
AC8
B
72 85Right-handed alpha
Helix 27
AC9
B
93 97Right-handed 310
Helix 28
AD1
B
98 112Right-handed alpha
Helix 29
AD2
B
113 123Right-handed alpha
Helix 30
AD3
B
187 214Right-handed alpha
Helix 31
AD4
B
214 225Right-handed alpha
Helix 32
AD5
B
227 241Right-handed alpha
Helix 33
AD6
B
250 256Right-handed 310
Helix 34
AD7
B
258 273Right-handed alpha
Helix 35
AD8
B
275 292Right-handed alpha
Helix 36
AD9
B
293 302Right-handed alpha
Helix 37
AE1
B
303 307Right-handed 310
Helix 38
AE2
B
313 339Right-handed alpha
Helix 39
AE3
B
342 346Right-handed 310
Helix 40
AE4
B
349 365Right-handed alpha
Helix 41
AE5
B
378 391Right-handed alpha
Helix 42
AE6
B
417 423Right-handed alpha
Helix 43
AE7
B
425 441Right-handed alpha
Helix 44
AE8
B
441 448Right-handed alpha
Helix 45
AE9
B
453 466Right-handed alpha
Helix 46
AF1
B
475 481Right-handed alpha
Helix 47
AF2
B
494 499Right-handed 310
Helix 48
AF3
B
500 516Right-handed alpha
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There are 2 sheets in PDB entry 8Y6M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
B
527 528anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
B
396 397anti-parallel
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