Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y6P entry

There is 1 chain in PDB entry 8Y6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Q	TYR 10	GLU 1373

There are 39 helices in PDB entry 8Y6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Q	11	17	Right-handed alpha
Helix 2	AA2	Q	20	27	Right-handed alpha
Helix 3	AA3	Q	41	50	Right-handed alpha
Helix 4	AA4	Q	53	68	Right-handed alpha
Helix 5	AA5	Q	69	79	Right-handed alpha
Helix 6	AA6	Q	80	85	Right-handed alpha
Helix 7	AA7	Q	85	96	Right-handed alpha
Helix 8	AA8	Q	100	117	Right-handed alpha
Helix 9	AA9	Q	117	123	Right-handed alpha
Helix 10	AB1	Q	127	141	Right-handed alpha
Helix 11	AB2	Q	156	167	Right-handed alpha
Helix 12	AB3	Q	167	174	Right-handed alpha
Helix 13	AB4	Q	190	204	Right-handed alpha
Helix 14	AB5	Q	216	233	Right-handed alpha
Helix 15	AB6	Q	234	238	Right-handed 310
Helix 16	AB7	Q	249	257	Right-handed alpha
Helix 17	AB8	Q	268	275	Right-handed alpha
Helix 18	AB9	Q	293	303	Right-handed alpha
Helix 19	AC1	Q	322	333	Right-handed alpha
Helix 20	AC2	Q	341	345	Right-handed 310
Helix 21	AC3	Q	350	355	Right-handed alpha
Helix 22	AC4	Q	364	371	Right-handed alpha
Helix 23	AC5	Q	372	374	Right-handed 310
Helix 24	AC6	Q	383	390	Right-handed alpha
Helix 25	AC7	Q	397	409	Right-handed alpha
Helix 26	AC8	Q	438	449	Right-handed alpha
Helix 27	AC9	Q	465	470	Right-handed alpha
Helix 28	AD1	Q	470	477	Right-handed alpha
Helix 29	AD2	Q	479	485	Right-handed alpha
Helix 30	AD3	Q	493	502	Right-handed alpha
Helix 31	AD4	Q	517	522	Right-handed alpha
Helix 32	AD5	Q	523	528	Right-handed alpha
Helix 33	AD6	Q	536	553	Right-handed alpha
Helix 34	AD7	Q	563	570	Right-handed alpha
Helix 35	AD8	Q	574	583	Right-handed alpha
Helix 36	AD9	Q	1011	1017	Right-handed 310
Helix 37	AE1	Q	1130	1134	Right-handed 310
Helix 38	AE2	Q	1260	1266	Right-handed alpha
Helix 39	AE3	Q	1319	1323	Right-handed alpha

There are 19 sheets in PDB entry 8Y6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	178	182	first strand
Strand 2	Q	241	247	parallel
Strand 3	Q	261	266	parallel
Strand 4	Q	146	150	parallel
Strand 5	Q	280	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	380	382	first strand
Strand 2	Q	419	421	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	590	591	first strand
Strand 2	Q	1366	1371	anti-parallel
Strand 3	Q	1356	1360	anti-parallel
Strand 4	Q	1348	1350	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	603	604	first strand
Strand 2	Q	928	935	anti-parallel
Strand 3	Q	915	923	anti-parallel
Strand 4	Q	902	909	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	603	604	first strand
Strand 2	Q	928	935	anti-parallel
Strand 3	Q	949	950	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	610	616	first strand
Strand 2	Q	620	625	anti-parallel
Strand 3	Q	630	634	anti-parallel
Strand 4	Q	643	645	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	654	660	first strand
Strand 2	Q	665	670	anti-parallel
Strand 3	Q	675	679	anti-parallel
Strand 4	Q	696	697	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	714	720	first strand
Strand 2	Q	731	736	anti-parallel
Strand 3	Q	740	747	anti-parallel
Strand 4	Q	752	755	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	714	720	first strand
Strand 2	Q	731	736	anti-parallel
Strand 3	Q	740	747	anti-parallel
Strand 4	Q	761	762	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	768	774	first strand
Strand 2	Q	778	783	anti-parallel
Strand 3	Q	788	792	anti-parallel
Strand 4	Q	798	801	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	815	817	first strand
Strand 2	Q	828	831	anti-parallel
Strand 3	Q	836	842	anti-parallel
Strand 4	Q	848	854	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	862	867	first strand
Strand 2	Q	873	878	anti-parallel
Strand 3	Q	881	886	anti-parallel
Strand 4	Q	892	895	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	971	977	first strand
Strand 2	Q	984	988	anti-parallel
Strand 3	Q	993	996	anti-parallel
Strand 4	Q	1007	1009	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1020	1025	first strand
Strand 2	Q	1031	1035	anti-parallel
Strand 3	Q	1040	1042	anti-parallel
Strand 4	Q	1047	1048	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1060	1062	first strand
Strand 2	Q	1068	1073	anti-parallel
Strand 3	Q	1078	1083	anti-parallel
Strand 4	Q	1098	1100	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1104	1110	first strand
Strand 2	Q	1114	1119	anti-parallel
Strand 3	Q	1123	1127	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1144	1150	first strand
Strand 2	Q	1153	1158	anti-parallel
Strand 3	Q	1162	1170	anti-parallel
Strand 4	Q	1175	1184	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1191	1196	first strand
Strand 2	Q	1202	1207	anti-parallel
Strand 3	Q	1212	1218	anti-parallel
Strand 4	Q	1221	1228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1238	1241	first strand
Strand 2	Q	1247	1251	anti-parallel
Strand 3	Q	1254	1259	anti-parallel
Strand 4	Q	1334	1339	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6P