Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6T entry

There are 4 chains in PDB entry 8Y6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9GLU 227
B
 SER 9ASN 222
C
 SER 9GLU 227
D
 SER 9LEU 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8Y6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
29 35Right-handed 310
Helix 3
AA3
A
81 98Right-handed alpha
Helix 4
AA4
A
115 130Right-handed alpha
Helix 5
AA5
A
174 185Right-handed 310
Helix 6
AA6
A
201 208Right-handed alpha
Helix 7
AA7
B
13 17Right-handed 310
Helix 8
AA8
B
29 35Right-handed 310
Helix 9
AA9
B
81 98Right-handed alpha
Helix 10
AB1
B
115 130Right-handed alpha
Helix 11
AB2
B
150 154Right-handed alpha
Helix 12
AB3
B
174 185Right-handed 310
Helix 13
AB4
B
201 208Right-handed alpha
Helix 14
AB5
C
13 17Right-handed 310
Helix 15
AB6
C
29 35Right-handed 310
Helix 16
AB7
C
81 98Right-handed alpha
Helix 17
AB8
C
115 130Right-handed alpha
Helix 18
AB9
C
174 185Right-handed 310
Helix 19
AC1
C
201 208Right-handed alpha
Helix 20
AC2
D
13 17Right-handed 310
Helix 21
AC3
D
29 35Right-handed 310
Helix 22
AC4
D
81 98Right-handed alpha
Helix 23
AC5
D
115 130Right-handed alpha
Helix 24
AC6
D
174 185Right-handed 310
Helix 25
AC7
D
201 208Right-handed alpha
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There are 10 sheets in PDB entry 8Y6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
198 199anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
69 75parallel
Strand 4
A
102 109parallel
Strand 5
A
135 141parallel
Strand 6
A
160 164parallel
Strand 7
A
189 194parallel
Strand 8
A
213 219parallel
Strand 9
A
19 22parallel
Strand 10
A
37 47parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
170 171anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
37 48anti-parallel
Strand 3
B
68 75parallel
Strand 4
B
102 109parallel
Strand 5
B
135 141parallel
Strand 6
B
160 164parallel
Strand 7
B
189 194parallel
Strand 8
B
213 219parallel
Strand 9
B
19 22parallel
Strand 10
B
37 48parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
170 171anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
37 47anti-parallel
Strand 3
C
69 75parallel
Strand 4
C
102 109parallel
Strand 5
C
135 141parallel
Strand 6
C
160 164parallel
Strand 7
C
189 194parallel
Strand 8
C
213 219parallel
Strand 9
C
19 22parallel
Strand 10
C
37 47parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 167first strand
Strand 2
C
170 171anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
D
198 199anti-parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 56first strand
Strand 2
D
37 48anti-parallel
Strand 3
D
68 75parallel
Strand 4
D
102 109parallel
Strand 5
D
135 141parallel
Strand 6
D
160 164parallel
Strand 7
D
189 194parallel
Strand 8
D
213 219parallel
Strand 9
D
19 22parallel
Strand 10
D
37 48parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 167first strand
Strand 2
D
170 171anti-parallel
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