Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y6Z entry

There is 1 chain in PDB entry 8Y6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLY 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8Y6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
34 45Right-handed alpha
Helix 2
AA2
B
57 62Right-handed alpha
Helix 3
AA3
B
70 83Right-handed alpha
Helix 4
AA4
B
84 87Right-handed 310
Helix 5
AA5
B
100 118Right-handed alpha
Helix 6
AA6
B
131 150Right-handed alpha
Helix 7
AA7
B
164 167Right-handed 310
Helix 8
AA8
B
185 202Right-handed alpha
Helix 9
AA9
B
204 219Right-handed alpha
Helix 10
AB1
B
230 247Right-handed alpha
Helix 11
AB2
B
250 274Right-handed alpha
Helix 12
AB3
B
284 303Right-handed alpha
Helix 13
AB4
B
309 313Right-handed 310
Helix 14
AB5
B
317 334Right-handed alpha
Helix 15
AB6
B
336 357Right-handed alpha
Helix 16
AB7
B
358 362Right-handed 310
Helix 17
AB8
B
364 374Right-handed alpha
Helix 18
AB9
B
385 399Right-handed alpha
Helix 19
AC1
B
400 406Right-handed alpha
Helix 20
AC2
B
415 437Right-handed alpha
Helix 21
AC3
B
472 485Right-handed alpha
Helix 22
AC4
B
496 506Right-handed alpha
Helix 23
AC5
B
545 550Right-handed alpha
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There are 3 sheets in PDB entry 8Y6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
174 181parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
122 126parallel
Strand 6
B
3 9parallel
Strand 7
B
49 56parallel
Strand 8
B
89 94parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
174 181parallel
Strand 4
B
168 171anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 469first strand
Strand 2
B
556 560anti-parallel
Strand 3
B
524 527anti-parallel
Strand 4
B
447 449parallel
Strand 5
B
489 491parallel
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